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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTGGGAGTCCTCCTGGGCAAATGGATCCTAAAGCATTTTTGCTTCAAAAGTTTAATGTAACAGCTAGGCAACGAgtaagttcttggtttactgttaaattcatttttggagttttggttccttgtgtaatgaaagtttcaatttggttccaatggttcaaattgcaatgatgct...

Basic information

species Glycine max
transcript GLYMA08G12110.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G12110.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g00560.t01 (Vitis vinifera), 5'ss of exon 7
GGATTGGGAGTCCTCCTGGGCAAATGGATCCTAAAGCATTTTTGCTTCAAAAGTTTAATGTAACAGCTAGGCAACGAgtaagtt---cttggtttactgttaaattcatttttggagttttggttccttgtgtaatgaaagtttcaatttggttccaatggttcaaattgcaatgatgct
| ||||| |  |||||||| ||||||||||| |||||||| ||||| || ||||| | || ||||||| |  ||||||||||||   | ||  ||    | |||   |     ||      |        | || |  ||   | |||    |     |     |   | | |||||   
GTATTGGAAAGCCTCCTGGTCAAATGGATCCCAAAGCATTCTTGCTCCAGAAGTTCAGTGCAACAGCTCGAGAACGAgtaagtttatcatgacttttaatcaaacaaaaaaaagggaaaaggaaaaaacctatattccaa-catgaatcccatcttgttatccaattctactatgatt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327646|gb|FK020665.1|FK020665
EST:     ATCCTAAAGCATTTTTGCTTCAAAAGTTTAATGTAACAGCTAGGCAACGA                         ATTGATGAGGCTTTGCAAGAGGGGATTGATGCCTTGAAGCTCCTTTTATCT
genomic: ATCCTAAAGCATTTTTGCTTCAAAAGTTTAATGTAACAGCTAGGCAACGAgtaagttctt ... ttttggacagATTGATGAGGCTTTGCAAGAGGGGATTGATGCCTTGAAGCTCCTTTTATCT
EST: gi|192327645|gb|FK020664.1|FK020664
EST:     ATCCTAAAGCATTTTTGCTTCAAAAGTTTAATGTAACAGCTAGGCAACGA                         ATTGATGAGGCTTTGCAAGAGGGGATTGATGCCTTGAAGCTCCTTTTATCT
genomic: ATCCTAAAGCATTTTTGCTTCAAAAGTTTAATGTAACAGCTAGGCAACGAgtaagttctt ... ttttggacagATTGATGAGGCTTTGCAAGAGGGGATTGATGCCTTGAAGCTCCTTTTATCT
EST: gi|192326838|gb|FK015110.1|FK015110
EST:     ATCCTAAAGCATTTTTGCTTCAAAAGTTTAATGTAACAGCTAGGCAACGA                         ATTGATGAGGCTTTGCA-GAGGGGATTGATGCCTTGAAGCTCCTTTTATCT
genomic: ATCCTAAAGCATTTTTGCTTCAAAAGTTTAATGTAACAGCTAGGCAACGAgtaagttctt ... ttttggacagATTGATGAGGCTTTGCAAGAGGGGATTGATGCCTTGAAGCTCCTTTTATCT