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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgttggttgattttattgtgagagcatgtctctgcaatgcgagtctttccataatgatgatgcattccaaatgccctttcaaattcattttttcttgtaag...

Basic information

species Glycine max
transcript GLYMA07G05220.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os02g54340.2 (Oryza sativa), 5'ss of exon 8
GTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgt-tggttgattttattgtgagagcatgtctctgcaa---tgcgagtctttccataatgat-gatgcattccaaatgcc------ctttcaaattcattttttcttgtaag
| ||||| |||||||||||||| |||||| | ||||||||||| || || ||||||||||||||  ||||||||||||| ||| ||||||| || || |||| | |   ||  || ||||     || | |||  ||   |  |  | | | ||  |  || |   |||    |  ||       ||  | |  |  | || | |||| ||
GGGGTGATAATGAGGTTCAGCGTACCATGTTGGAAATTGTGAACCAACTCGATGGGTTTGATGCGAGGGGAAACATCAAGGTTCTGATGGCCACAAACAGgtattgcatatcatactgtgtagctatttatctttaaacatctgcatgtgttcaggactatcgccacatgagtagagctgagaagctgaccacattttcttgttttgtcag

upper sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G110185_T04 (Zea mays), 5'ss of exon 7
GTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgt--tggttgattttatt-gtgagagcatgtctctgca-atgc--gagtctttccataat----gatgatgcat-tccaaatgccctttcaaattcattttttcttgtaag------------------------------------------------------------------------
|||||||||||||||| ||||| || ||| | ||||| || || || |||||||||||||||||  | || |||||||||||| | ||||| ||||||||||  |  || ||| || | ||||   ||  ||  |  |  |||   | || | |   ||     |||  || || |   ||   |      ||  | || |    |  | |                                                                        
GTGGTGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAACTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttttcattctactcgtgattccagatccttttatgtgcttaactcgtactcaaacacaggattttgaatatgtgaacttctgcatgaaacctttataggctccatgccttgagttgatatggcaatttattggccgtatcctaggccctggaagctgaccaccttttcccccctccag

upper sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 8
GTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgttggttgattttattgtgagagcatgtctctgcaatgcgagtctttccataatgatg-atgcattccaaatgccctttcaaattcattttttcttgtaag--
|||| ||||||||||| ||||| || ||| | ||||| || || ||||||||||||||||||||  | || |||||||||||| | ||||| ||||||||||   ||  |||| |        |   ||| |   ||| |  ||         | |||     |   | |   |  ||   ||   ||| |     | ||   
GTGGCGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAGCTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatttttttcccttctac---tctttctcatgtggttccagatccttttatgtgcttacctcgagctctattctgaagctattatcagaagaaacat

upper sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 8
GTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgttggttgattttatt-gtgagagcatgtctctgcaatgcgagtctttccataatgatgatgcattccaaatgccctttcaaattcattttttcttgtaag
|||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||| | |||||||| |||||||| ||||  |   ||  |  ||  || | ||||   |||    ||  |  |  |    |||  |           |||   | | ||    | |   || 
GTGGGGACAATGAGGTCCAGCGTACCATGCTTGAGATTGTAAATCAGCTTGATGGGTTTGATGCTCGAGGAAATATCAAAGTTCTAATGGCAACAAATAGgttagttggctaccttcattggattat-tgtctgtgttgctgtgctaccactgttagaaatggttgttggggttatttttctagtaatgcaatatgacaat

upper sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S152_13V6.2 (Physcomitrella patens), 5'ss of exon 8
GTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgttggttgattttattgtgagagcatgtctctgc-aatgcgagtct--ttccataatgatgatgca--------ttccaaatgccctttcaaattcatttt---ttcttgtaag----------------------------------------------------------------------------------
| ||||| |||||||||||  | || ||||||||||| || ||||| ||||| || || |||||||| || || |||||||| ||||||||||| |||||||    |   |   |         || |    |  ||||    |||  |||  |   | || || |        ||    | |     ||| | | ||      |  |||||                                                                                    
GGGGTGATAATGAGGTTCAAAGAACAATGCTTGAAATCGTCAATCAACTTGACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccctcgctgacatatttatcttgaagttaatggtgctctgcttctgtggagttggtgtaggatctgtttgtggacgttgcgtcagaattatcagaggtgtttgtacacccatcaaatcaataatgtaattcaagcgattttagacagctcaaacattcgccttgtaaacgaacatgtggttttttacag

upper sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ13722 (Selaginella moellendorffii), 5'ss of exon 8
GTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgt-tggttgattttattgtgagagcatgtctctgcaatgcgagtctttccataatgatgatgcattccaaatgccctttcaaattcattttttcttgtaag
|||| ||||| || || ||  | || ||||| || ||||| |||||||||||||| ||||||||||| || ||||| |||||||||||||| || || ||||   |  || || ||  | ||    |  |  |  ||      |   |||| |  |                                             
GTGGCGACAACGAAGTGCAAAGGACGATGCTCGAGATTGTCAATCAGCTTGATGGTTTTGATGCTCGTGGGAACATTAAAGTTTTGATGGCCACGAACAGgtactgccgacttcatc-taagtcttttccaatcaaacttacattactccaaacag---------------------------------------------

upper sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ29161 (Selaginella moellendorffii), 5'ss of exon 8
GTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgt-tggttgattttattgtgagagcatgtctctgcaatgcgagtctttccataatgatgatgcattccaaatgccctttcaaattcattttttcttgtaag
|||| ||||| || || ||  | || ||||| || ||||| |||||||| ||||| ||||||||||| || ||||| |||||||||||||| || || ||||   |  || || ||  | ||    |  |  |  ||      |   |||| |  |                                             
GTGGCGACAACGAAGTGCAAAGGACGATGCTCGAGATTGTCAATCAGCTGGATGGTTTTGATGCTCGTGGGAACATTAAAGTTTTGATGGCCACGAACAGgtactgccgacttcatc-taagtcttttccaatcaaacttacattactccaaacag---------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209728032|gb|BW666754.1|BW666754
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAG                         GCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
EST: gi|8284561|gb|BE022129.1|BE022129
EST:     GATGGGTTTGATGCTC-GGGAAACATCAAAGTTTTGATGGCAACTAATAG                         GCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
EST: gi|19937368|gb|BQ081261.1|BQ081261
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAG                         GCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
EST: gi|16277271|gb|BI942294.1|BI942294
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCGACTAATAG                         GCCTGACACTCTAGATCCAGCACTACTGCGGCCTGAGCGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
EST: gi|57575942|gb|CX548913.1|CX548913
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAG                         GCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
EST: gi|192302202|gb|FG997282.1|FG997282
EST:     GATGGGTTTGATGCTCGGGGAACCATCAAAGTTTTGATGGCAACTAATAG                         GCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
EST: gi|207771905|gb|GD745676.1|GD745676
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTATTAG                         GCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
EST: gi|58024535|gb|CX711276.1|CX711276
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAG                         GCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
EST: gi|209728031|gb|BW666753.1|BW666753
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAG                         GCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
EST: gi|209717333|gb|BW659036.1|BW659036
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAG                         GCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
EST: gi|58021578|gb|CX708319.1|CX708319
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAG                         GCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
EST: gi|163926888|gb|EH040053.1|EH040053
EST:     AGTTTTGATGGC-ACTAATAG                         GCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
genomic: AGTTTTGATGGCAACTAATAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
EST: gi|19269325|gb|BM885581.1|BM885581
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAG                         GCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
EST: gi|7327091|gb|AW620889.1|AW620889
EST:     GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAG                         GCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgttggttgat ... caatttctagGCCTGACACTCTAGATCCAGCACTACTGCGGCCTGGGCGATTGGACCGTAA