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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGTATTCTTGGAAGGGAATCCTTACCTCCTGGCAATTACCATGGTTGTTTCTCTTCTCCATTCAGTCTTTGACTTCTTGGCTTTCAAGAATGgtaagtcaattgtccaacagtctttaagaaagcacctccaataaggaaatgcatatggatttggttagaggtacaggtaatcatctaattattttctctcttcccag

Basic information

species Glycine max
transcript GLYMA06G16940.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16940.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0130g00170.t01 (Vitis vinifera), 5'ss of exon 8
AGGGTATTCTTGGAAGGGAATCCTTACCTCCTGGCAATTACCATGGTTGTTTCTCTTCTCCATTCAGTCTTTGACTTCTTGGCTTTCAAGAATGgtaagt--caattgtcca-------acagtctttaagaaagcacctc--caataag---gaaatgcatatgga-tttggttagaggtacaggtaatcatctaattattttctctcttcccag
||||||||||||||||| |||||||| |||||||   |||| ||||| || ||   ||| ||||| || ||||| |||||||| ||||||||||| ||||  ||||| |           ||   || ||     ||  ||  || |||    ||      | ||   |||  | |    |  || | || |    ||| ||   |  ||   |||
AGGGTATTCTTGGAAGGAAATCCTTATCTCCTGGTGGTTACAATGGTGGTCTCATGTCTTCATTCGGTGTTTGATTTCTTGGCATTCAAGAATGgcaagtgacaattattagtataattgcatgtttcaatttctcatttctgcattaactttgaggcttgtgtgatctttcatgatgaatgtagcttattaatctatt-ttgctttcctcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193656349|gb|FK602821.1|FK602821
EST:     GGTTGTTTCTCTTCTCCATTCAGTCTTTGACTTCTTGGCTTTCAAGAATG                         ATATCCAATTTTGGAATAAAAATAAATCTATGGAAGGACTCTCTGCAAAGA
genomic: GGTTGTTTCTCTTCTCCATTCAGTCTTTGACTTCTTGGCTTTCAAGAATGgtaagtcaat ... ctcttcccagATATCCAATTTTGGAATAAAAATAAATCTATGGAAGGACTCTCTGCAAAGA
EST: gi|24135377|gb|BU925878.1|BU925878
EST:     GGTTGTTTCTCTTCTCCATTCAGTCTTTGACTTCTTGGCTTTCAAGAATG                         ATATCCAATTTTGGAATAAAAATAAATCTATGGAAGGACTCTCTGCGAAGA
genomic: GGTTGTTTCTCTTCTCCATTCAGTCTTTGACTTCTTGGCTTTCAAGAATGgtaagtcaat ... ctcttcccagATATCCAATTTTGGAATAAAAATAAATCTATGGAAGGACTCTCTGCAAAGA