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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAGgtacaattggtgttaacacgtattgcatgttccttagtcatgccatccttgtcatcataactcacctttgtaaaattttgtattgcag

Basic information

species Glycine max
transcript GLYMA06G06850.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10236817|gb|BE805705.1|BE805705
EST:     CATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG                         GTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTAC
genomic: CATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAGgtacaattgg ... tgtattgcagGTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTAC
EST: gi|6482526|gb|AW201783.1|AW201783
EST:     CATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG                         GTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTAC
genomic: CATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAGgtacaattgg ... tgtattgcagGTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTAC
EST: gi|15815079|gb|BI787354.1|BI787354
EST:     CATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG                         GTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTAC
genomic: CATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAGgtacaattgg ... tgtattgcagGTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTAC
EST: gi|207696688|gb|GD676977.1|GD676977
EST:     AGCTTGTACATATTATAAAG                         GTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTAC
genomic: AGCTTGTACATATTATAAAGgtacaattgg ... tgtattgcagGTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTAC
EST: gi|193456694|gb|FK423524.1|FK423524
EST:     CGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG                         GTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTAC
genomic: CGAAAATGCAGTAGACCAGCTTGTACATATTATAAAGgtacaattgg ... tgtattgcagGTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTAC
EST: gi|207772416|gb|GD742672.1|GD742672
EST:     CATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG                         GTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAAT
genomic: CATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAGgtacaattgg ... tgtattgcagGTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAAT
EST: gi|7590646|gb|AW706394.1|AW706394
EST:     CATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG                         GTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTAC
genomic: CATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAGgtacaattgg ... tgtattgcagGTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTAC
EST: gi|14990804|gb|BI316477.1|BI316477
EST:     CATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG                         GTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTAC
genomic: CATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAGgtacaattgg ... tgtattgcagGTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTAC
EST: gi|6455159|gb|AW185842.1|AW185842
EST:     CATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAG                         GTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTAC
genomic: CATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAGgtacaattgg ... tgtattgcagGTGCTTGGCACACCCACCCGAGAGGAAGTACGCTGTATGAATCCCAATTAC