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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGATGTCACTTTCCATCAATGTGTAAATTTGACAAGGTTCAACTCAGAGAAGACAGTTAGTTTTGTACCACCTGATGGTGAATTTGAACTAATGAAgtaggttctttctttcaatcctgtctcttgctatctaatttcagaaatcaacagctaatattctcattggtttttttgggtgggtgtggaggttcaacta...

Basic information

species Glycine max
transcript GLYMA05G23670.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G23670.2 (Glycine max), 5'ss of exon 8
lower sequence: AT5G46630.2 (Arabidopsis thaliana), 5'ss of exon 8
TTGATGATGTCACTTTCCATCAATGTGTAAATTTGACAAGGTTCAACTCAGAGAAGACAGTTAGTTTTGTACCACCTGATGGTGAATTTGAACTAATGAAgtaggttctttctttcaatcctgtctcttgctatctaatttcagaaatcaacagctaatattctcattggtttttttgggtgggtgtggaggttcaacta
||||||||||||| || || || ||||| ||  |||| || |||||||| |||||||| ||||||||||||||||| ||||| || |||||||| |||||||| |||     ||  |||     || |||| |  |   ||| |  | |||  |   ||   ||   || | | |  |                      
TTGATGATGTCACATTTCACCAGTGTGTGAACCTGACCAGATTCAACTCCGAGAAGACTGTTAGTTTTGTACCACCGGATGGAGAGTTTGAACTGATGAAgtaagtt-----ttcgaatgtccactgttgcaaattg--ttctggtaccaaatgtgtattaactttatgatgtctcag----------------------

upper sequence: GLYMA05G23670.2 (Glycine max), 5'ss of exon 8
lower sequence: PP1S54_156V6.1 (Physcomitrella patens), 5'ss of exon 8
TTGATGATGTCACTTTCCATCAATGTGTAAATTTGACAAGGTTCAACTCAGAGAAGACAGTTAGTTTTGTACCACCTGATGGTGAATTTGAACTAATGAAgtaggttctttctttcaatcctgtct-cttgctatctaat---ttcaga---aatcaacagctaatat--tctcattggtttttttgggtgggtgtggaggttcaacta---------------------------------------------------------------------------------------
||||||| ||||| ||||| || ||||| ||| | || || |||||  | ||||||||||| ||||| || ||||| ||||| || |||||||| |||||||| ||||||    |   | || |   |  |  ||  | |   |||||    | |  ||||  | | |   | |  ||     ||| ||  |         || ||  |                                                                                       
TTGATGACGTCACATTCCACCAGTGTGTGAATCTTACGAGATTCAATGCCGAGAAGACAGTCAGTTTCGTTCCACCGGATGGAGAGTTTGAACTGATGAAgtaagttcttgagctatgtacttttggccaggaatgaagtgcgttcagttctagttcacagggagtgtaaccgcgctgtcacctttcggaagagaacataatttaatgatctagttgatgctactatatcttgcatgcggacagtggtctttacctgcggcacatcctaagctttgagcattttatcaatgcacag

upper sequence: GLYMA05G23670.2 (Glycine max), 5'ss of exon 8
lower sequence: PP1S197_28V6.1 (Physcomitrella patens), 5'ss of exon 8
TTGATGATGTCACTTTCCATCAATGTGTAAATTTGACAAGGTTCAACTCAGAGAAGACAGTTAGTTTTGTACCACCTGATGGTGAATTTGAACTAATGAAgtaggttctttctttcaatcctgtctcttgctatctaatttcagaaatcaacagctaatattctcattggtttttttgggtgggtgtggaggttcaacta
|||||||||| || ||||| |||||||| ||| | ||||| ||||   | ||||||||||| |||||||| ||||| ||||| ||||||||||| ||||||||  ||| |  | |   |    | |  ||  |   || | |   |||        |  |   || | |  |  |         | | |         ||
TTGATGATGTTACATTCCACCAATGTGTCAATCTCACAAGATTCACTGCTGAGAAGACAGTCAGTTTTGTTCCACCCGATGGAGAATTTGAACTCATGAAgtaaattcctgatctatgtatcttttactggaagtgaactgctacaattctttctcatgaagttcgtcgactcatgctctcaacttttggaagaagcata

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335623|gb|CO979489.1|CO979489
EST:     GAGAAGACAGTTAGTTTTGTACCACCTGATGGTGAATTTGAACTAATGAA                         GTATCGTATAACTGAGGGAGTTAATCTTCCGTTCAAAGTATTGCCAACCAT
genomic: GAGAAGACAGTTAGTTTTGTACCACCTGATGGTGAATTTGAACTAATGAAgtaggttctt ... atctgggcagGTATCGTATAACTGAGGGAGTTAATCTTCCGTTCAAAGTATTGCCAACCAT
EST: gi|58020847|gb|CX707589.1|CX707589
EST:     GAGAAGACAGTTAGTTTTGTACCACCTGATGGTGAATTTGAACTAATGAA                         GTATCGTATAACTGAGGGAGTTAATCTTCCGTTCAAAGTATTGCCAACCAT
genomic: GAGAAGACAGTTAGTTTTGTACCACCTGATGGTGAATTTGAACTAATGAAgtaggttctt ... atctgggcagGTATCGTATAACTGAGGGAGTTAATCTTCCGTTCAAAGTATTGCCAACCAT
EST: gi|58017189|gb|CX703931.1|CX703931
EST:     GAGAAGACAGTTAGTTTTGTACCACCTGATGGTGAATTTGAACTAATGAA                         GTATCGTATAACTGAGGGAGTTAATCTTCCGTTCAAAGTATTGCCAACCAT
genomic: GAGAAGACAGTTAGTTTTGTACCACCTGATGGTGAATTTGAACTAATGAAgtaggttctt ... atctgggcagGTATCGTATAACTGAGGGAGTTAATCTTCCGTTCAAAGTATTGCCAACCAT
EST: gi|58017359|gb|CX704101.1|CX704101
EST:     GAGAAGACAGTTAGTTTTGTACCACCTGATGGTGAATTTGAACTAATGAA                         GTATCGTATAACTGAGGGAGTT-ATCTTCCGTTCAAAGTA-TGCCCAACCA
genomic: GAGAAGACAGTTAGTTTTGTACCACCTGATGGTGAATTTGAACTAATGAAgtaggttctt ... atctgggcagGTATCGTATAACTGAGGGAGTTAATCTTCCGTTCAAAGTATTG-CCAACCA
EST: gi|16349156|gb|BI974751.1|BI974751
EST:     GAGAAGACAGTTAGTTTTGTACCACCTGATGGTGAATTTGAACTAATGAA                         GTATCGTATAACTGAGGGAGTTAATCTTCCGTTCAAAGTATTGCCAACCAT
genomic: GAGAAGACAGTTAGTTTTGTACCACCTGATGGTGAATTTGAACTAATGAAgtaggttctt ... atctgggcagGTATCGTATAACTGAGGGAGTTAATCTTCCGTTCAAAGTATTGCCAACCAT