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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTCATTGTGTGGATAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattttactagcagagtctcttgcaggttatacttagctgctacatattactgacataattaatttctaaag

Basic information

species Glycine max
transcript GLYMA05G03730.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G03730.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv02s0025g04710.t01 (Vitis vinifera), 5'ss of exon 8
TTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCCCTCATTGTGTGGATAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattttactagcagagtctcttgcaggttatacttagctgctacatattactgacataatt----aatttctaaag-------------
 || |||||||||||||| ||||||||||| || ||||||||  | ||| || ||| | || | || ||    ||| | ||||| ||| ||||  |||||||| || || | |   ||     | |      ||||||| |    | |  |  ||      |||      || |  ||||              
ATTCAGTTTCATTTTCACGTGGTTTGCTGCAGTGCCCCTCATATTTTGGCTATCTCAGACAATTACCAAATTTATTTTGAAAGATTTTTTGATCCTAAAGgtaaaatttctgcacacatttattataaggttttatactgaaaatccatgttatatcagtttaaccgcccaactaataaaacattgttttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31462360|gb|CD404388.1|CD404388
EST:     TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAG                         GGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
genomic: TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattt ... atttctaaagGGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
EST: gi|22524501|gb|BU083312.1|BU083312
EST:     TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAG                         GGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
genomic: TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattt ... atttctaaagGGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
EST: gi|6455321|gb|AW186004.1|AW186004
EST:     TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAG                         GGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
genomic: TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattt ... atttctaaagGGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
EST: gi|13787698|gb|BG650290.1|BG650290
EST:     TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAG                         GGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
genomic: TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattt ... atttctaaagGGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
EST: gi|120496159|gb|EH224326.1|EH224326
EST:     TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAG                         GGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
genomic: TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattt ... atttctaaagGGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
EST: gi|13482176|gb|BG511519.1|BG511519
EST:     TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAG                         GGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
genomic: TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattt ... atttctaaagGGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
EST: gi|7283858|gb|AW596460.1|AW596460
EST:     TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAG                         GGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
genomic: TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattt ... atttctaaagGGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
EST: gi|209729478|gb|BW655108.1|BW655108
EST:     TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAG                         GGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
genomic: TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattt ... atttctaaagGGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
EST: gi|10254275|gb|BE822041.1|BE822041
EST:     TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAG                         GGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
genomic: TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattt ... atttctaaagGGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
EST: gi|209698687|gb|BW656512.1|BW656512
EST:     TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAG                         GGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
genomic: TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattt ... atttctaaagGGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
EST: gi|120497248|gb|EH225415.1|EH225415
EST:     TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAG                         GGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
genomic: TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattt ... atttctaaagGGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
EST: gi|13482252|gb|BG511595.1|BG511595
EST:     TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAG                         GGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
genomic: TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattt ... atttctaaagGGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
EST: gi|17402207|gb|BM178989.1|BM178989
EST:     TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAG                         GGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA
genomic: TAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGgtataaattt ... atttctaaagGGTCCTTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATA