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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAGgtaaattttaggcacaactgctttgtagattttaagctcttactatcagaaatatagggggtaaaagtttaaatttttttaacagaatttgaacacaccacttatagcataacaactctttgtaacatgtcacacgtgaatgcag

Basic information

species Glycine max
transcript GLYMA03G31600.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G31600.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G159295_T02 (Zea mays), 5'ss of exon 8
TTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAGgtaaattttaggcaca--actgctttgtagattttaagctcttactatcagaaatatagg-gggtaaaagtttaaatttttttaacagaatttgaacacaccacttatagcataacaactctttgtaacatgtcacacgtgaatgcag
||| |||| || ||||||||||| |||||||||||||| || |||||||  ||  | || |    ||| |  |   |||||   |   || ||      | ||      |    ||||   || || |  |  |||                                                         
TTGAGAGAGTACATCGATGACACGGAAGATTACATCAATATCCAGgtaatgttgcgccatatagatgcatactgccttttatttttcgaccattcagtttctaaatacattttggttt---ttcttctttcgcaatgcag-----------------------------------------------------

upper sequence: GLYMA03G31600.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S76_98V6.2 (Physcomitrella patens), 5'ss of exon 9
TTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAGgtaaattttaggcacaactgctttgtagattttaagctcttactatcagaaatatagggggtaaaag-tttaaatttttttaacagaatttgaacacaccacttatagcataacaactctttgtaacatgtcacacgtgaatgcag
 | |||||||| || ||||| ||||| |||||||||||||||||||||     || ||   ||   | ||||| | |  |  |  | |  | ||| |   || ||| | | | |||  |  ||          ||||   |                                                  
CTTCGAGAATACATTGATGATACAGAGGATTACATCAACATACAGgtatcagctatgcc--acgtatatgtagctgtccactttatccgttaagagaggaagaggggagagggtttccagcttgcgtttgtcttttgtgtagtttga--------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22932940|gb|BU550079.1|BU550079
EST:     TTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAG                         CTGGACAATCACAGAAATCAATTGATTCAG
genomic: TTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAGgtaaatttta ... gtgaatgcagCTGGACAATCACAGAAATCAATTGATTCAG
EST: gi|13312668|gb|BG406319.1|BG406319
EST:     TTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACNAG                         CTGGACAATCACAGAAATCAATTGATTCAG
genomic: TTGCGAGAATATATCGATGACACAGAAGATTACATCAACATAC-AGgtaaatttta ... gtgaatgcagCTGGACAATCACAGAAATCAATTGATTCAG