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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAACACTCTTGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAGgtttgacactatcagaacttccattgacttattgaatttgtgataatttaaaactcttatgagcatgtctgacatagaatatgttttcctccag

Basic information

species Glycine max
transcript GLYMA02G34640.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G34640.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0007g05920.t01 (Vitis vinifera), 5'ss of exon 8
TGAAACACTCTTGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAGgtttgacactatcagaacttccattgacttattgaatttgtgataatttaaaactcttatgagcatgtctgacatagaatatgttttcctccag
|||||| ||  ||||||||||  | ||||||||||| ||||| || || |||||||||||||||| |   | || |   |  | ||  ||    |  ||  | |  ||   | |    ||| ||  | |   |  | || | | ||||  | |||
TGAAACCCTGCTGATTTTCTTTATTCCTCAAGTTTTAAACTTTCTATTATCACTCCCCCAGgtttaa---tttctg---tctccttctctctcagtcttcataactatgccagatg--tataaggcttttaaatttggattgtttttttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58021530|gb|CX708271.1|CX708271
EST:     TGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAG                         CTTTCTGGCTATATTCCTTGTCCACGTCATCGACTGCCAAG
genomic: TGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAGgtttgacact ... tttcctccagCTTTCTGGCTATATTCCTTGTCCACGTCATCGACTGCCAAG
EST: gi|192305577|gb|FG998333.1|FG998333
EST:     TGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAG                         CTTTCTGGCTATATTCCTTGTCCACGTCATCGACTGCCAAG
genomic: TGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAGgtttgacact ... tttcctccagCTTTCTGGCTATATTCCTTGTCCACGTCATCGACTGCCAAG
EST: gi|57575186|gb|CX548161.1|CX548161
EST:     TGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAG                         CTTTCTGGCTATATTCCTTGTCCACGTCATCGACTGCCAAG
genomic: TGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAGgtttgacact ... tttcctccagCTTTCTGGCTATATTCCTTGTCCACGTCATCGACTGCCAAG
EST: gi|254338362|gb|GR845612.1|GR845612
EST:     TGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAG                         CTTTCTGGCTATATTCCTTGTCCACGTCATCGACTGCCAAG
genomic: TGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAGgtttgacact ... tttcctccagCTTTCTGGCTATATTCCTTGTCCACGTCATCGACTGCCAAG