1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGAAGAGTACGGAGGTGGAAGAGACTTGGATGACTTTGTGGCTTTTATCAATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaatgacatcaaagagaagctagagttttgttttattttattttgtggtcggggatgaaagttaaaattgttgcagttggtgtcttattcatacatttgatattttctgtacag
species | Glycine max |
transcript | GLYMA02G01750.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTGGAACAAGTCGTAGTATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|254328074|gb|GR835039.1|GR835039
genomic: CTGGAACAAGTCG-AG-ATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|192331369|gb|FK021037.1|FK021037
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|57575003|gb|CX547978.1|CX547978
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|9901204|gb|BE610172.1|BE610172
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: ATGAGACATCTGGAACAAGTCGAGATGT-AAAGGACAACTTACTTCCCAA GCTGGTATAGTAGACAGCTAGGATGTCTTGG-TAAGCGAGTTTGTAGCTGCEST: gi|207730076|gb|GD708336.1|GD708336
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAG-GAGTTTGTAGCTGC
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|58016979|gb|CX703721.1|CX703721
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|254345056|gb|GR855713.1|GR855713
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|85056960|gb|DW585092.1|DW585092
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCEST: gi|192333635|gb|FK026880.1|FK026880
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGAGTACGGAGGTGGAAGAGACTTGGATGACTTTGTGGCTTTTATCAATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaatgacatcaaagagaagctagagttttgttttattttattttgtggtcggggatgaaagttaaaattgttgcagttggtgtcttattcatacatttgatattttctgtacag
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