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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGGGGAAGAATTGTATTTCACTGTTGGCTCTCAACACATTCCTTTTGGTGCATCTCCACAGgtaaactatgttacttttacatagaattgaaaccatttgagatatgcttttagtggatgaattttcctgtgctttctgttgcttcttgtcatctttcacttgattcatattctttttctcaaggaaagtttatgtaatgcttcctgttttatgcag

Basic information

species Glycine max
transcript GLYMA01G37380.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G37380.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G116434_T01 (Zea mays), 5'ss of exon 8
CTGGGGGAAGAATTGTATTTCACTGTTGGCTCTCAACACATTCCTTTTGGTGCATCTCCACAGgtaaactatgttacttttacatagaattgaaacc--atttgagatatgcttttagtggatgaattttcctgtgctttctgttgcttcttgtcatctttcacttgattcatattctttttctcaaggaaagtttatgtaatgcttcctgttttatgcag
|| || |||||| | |  |||||  | ||    ||||| ||||||||||||||||| ||||||||| |  |  |  || ||   |  |||  |||    | || | || |||  | | |   ||  |||| ||    |||||  |||                                                                          
CTTGGTGAAGAACTTTGGTTCACAATAGGGGGGCAACATATTCCTTTTGGTGCATCACCACAGgtacatcacatatctattttctgaaataaaaatataactttacat-tgccctgatt---tgtcttttacttgaatttcttctgcag------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15661878|gb|BI699249.1|BI699249
EST:     TGTATTTCACTGTTGGCTCTCAACACATTCCTTTTGGTGCATCTCCACAG                         GATGTCTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
genomic: TGTATTTCACTGTTGGCTCTCAACACATTCCTTTTGGTGCATCTCCACAGgtaaactatg ... ttttatgcagGATGTCTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG