1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAATCCAGATGAGGAGTATACTGAGGTGGAATCCCAATTGCGGGCACATCTGGAATCTTTCCTAGAAACAGCTAGAACATTCAATTTGATTTACACCAAGgtttgaccatgctttgcttgctctaatttgttttgatgccatcagagtctgggctgattttagtttctgactaggtatgcctgagaaataaagaaaggac...
species | Glycine max |
transcript | GLYMA01G29280.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGGAATCTTTCCTAGAAACAGCTAGAACATTCAATTTGATTTACACCAAG GAAATTCGTCCATGGACACACATGATGGAGGTTCCGCAACTTCATGGATTTEST: gi|51337334|gb|CO981200.1|CO981200
genomic: TGGAATCTTTCCTAGAAACAGCTAGAACATTCAATTTGATTTACACCAAGgtttgaccat ... ttttgtgtagGAAATTCGTCCATGGACACACATGATGGAGGTTCCGCAACTTCATGGATTT
EST: TGGAATCTTTCCTAGAAACAGCTAGAACATTCAATTTGATTTACACCAAG GAAATTCGTCCATGGACACACATGATGGAGGTTCCGCAACTTCATGGATTTEST: gi|38191775|gb|CF920981.1|CF920981
genomic: TGGAATCTTTCCTAGAAACAGCTAGAACATTCAATTTGATTTACACCAAGgtttgaccat ... ttttgtgtagGAAATTCGTCCATGGACACACATGATGGAGGTTCCGCAACTTCATGGATTT
EST: TGGAATCTTTCCTAGAAACAGCTAGAACATTCAATTTGATTTACACCAAG GAAATTCGTCCATGGACACACATGATGGAGGTTCCGCAACTTCATGGATTTEST: gi|193610429|gb|FK566217.1|FK566217
genomic: TGGAATCTTTCCTAGAAACAGCTAGAACATTCAATTTGATTTACACCAAGgtttgaccat ... ttttgtgtagGAAATTCGTCCATGGACACACATGATGGAGGTTCCGCAACTTCATGGATTT
EST: TGGAATCTTTCCTAGAAACAGCTAGAACATTCAATTTGATTTACACCAAG GAAATTCGTCCATGGACACACATGATGGAGGTTCCGCAACTTCATGGATTT
genomic: TGGAATCTTTCCTAGAAACAGCTAGAACATTCAATTTGATTTACACCAAGgtttgaccat ... ttttgtgtagGAAATTCGTCCATGGACACACATGATGGAGGTTCCGCAACTTCATGGATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATCCAGATGAGGAGTATACTGAGGTGGAATCCCAATTGCGGGCACATCTGGAATCTTTCCTAGAAACAGCTAGAACATTCAATTTGATTTACACCAAGgtttgaccatgctttgcttgctctaatttgttttgatgccatcagagtctgggctgattttagtttctgactaggtatgcctgagaaataaagaaaggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaataaa