1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCCTGTCTTTTTGTTTTCTGCGTGATACTGCTGCTGGTCTATATTTACATTAGGAGGAGAAGAAATGACTATGACTTTGCTCTACCTCATGAATTAACATgtaagtatgatttcattaagattttcttctgtcaagtttttattaagccaactggtatggctttaattactttagtgttgtggtttgttctcttttatgt...
species | Glycine max |
transcript | GLYMA01G22470.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TANGAGGAGAAGAAATGACTATGACTTTGCTCTACCTCATGAATTAACAT CATTAGCCGCCAAGAGAAACAGATATCAGAGGCAGAAATCCTTAATGGTTCEST: gi|21889499|gb|BQ742712.1|BQ742712
genomic: TAGGAGGAGAAGAAATGACTATGACTTTGCTCTACCTCATGAATTAACATgtaagtatga ... tctcatgcagCATTAGCCGCCAAGAGAAACAGATATCAGAGGCAGAAATCCTTAATGGTTC
EST: TAGGAGGAGAAGAAATGACTATGACTTTGCTCTACCTCATGAATTAACAT CATTAGCCGCCAAGAGAAACAGATATCAGAGGCAGAAATCCTTAATGGTTCEST: gi|19453276|gb|BM954686.1|BM954686
genomic: TAGGAGGAGAAGAAATGACTATGACTTTGCTCTACCTCATGAATTAACATgtaagtatga ... tctcatgcagCATTAGCCGCCAAGAGAAACAGATATCAGAGGCAGAAATCCTTAATGGTTC
EST: TAGGAGGAGAAGAAATGACTATGACTTTGCTCTACCTCATGAATTAACAT CATTAGCCGCCAAGAGAAACAGATATCAGAGGCAGAAATCCTTAATGGTTCEST: gi|31474099|gb|CD416127.1|CD416127
genomic: TAGGAGGAGAAGAAATGACTATGACTTTGCTCTACCTCATGAATTAACATgtaagtatga ... tctcatgcagCATTAGCCGCCAAGAGAAACAGATATCAGAGGCAGAAATCCTTAATGGTTC
EST: GAGG-GAAGAAATGACTATGACTTTGCTCTACCTCATGAATGAACAT CATTAGCCGCCAAGAGAAACAGATATCAGAGGCAGAAATCCTTAATGGTTC
genomic: GAGGAGAAGAAATGACTATGACTTTGCTCTACCTCATGAATTAACATgtaagtatga ... tctcatgcagCATTAGCCGCCAAGAGAAACAGATATCAGAGGCAGAAATCCTTAATGGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTGTCTTTTTGTTTTCTGCGTGATACTGCTGCTGGTCTATATTTACATTAGGAGGAGAAGAAATGACTATGACTTTGCTCTACCTCATGAATTAACATgtaagtatgatttcattaagattttcttctgtcaagtttttattaagccaactggtatggctttaattactttagtgttgtggtttgttctcttttatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA