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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCAATTCTGTTATCAAGAAAATTTAGCCTTGCTTGGAGATGAGGTTTACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgttgtgctgcagctgctgctaaactgatattttgcctcagtcattaatgtgaactaataatatatactttttctacatgagaag

Basic information

species Glycine max
transcript GLYMA01G03260.3
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208191199|gb|GD989187.1|GD989187
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|15815783|gb|BI788058.1|BI788058
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|20498717|gb|BQ273647.1|BQ273647
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|9902378|gb|BE611346.1|BE611346
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTGTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|20814673|gb|BQ299151.1|BQ299151
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|51337166|gb|CO981032.1|CO981032
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|7234812|gb|AW570145.1|AW570145
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|31561480|gb|CD487318.1|CD487318
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|23064381|gb|BU579154.1|BU579154
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|7796142|gb|AW781539.1|AW781539
EST:     ACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|26269528|gb|CA820591.1|CA820591
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCTTTCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|20498442|gb|BQ273372.1|BQ273372
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAG-AAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|193366000|gb|FK329021.1|FK329021
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGC
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGC
EST: gi|120532614|gb|EH260747.1|EH260747
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGCAATTCTGTTATCAAGAAAATTTAGCCTTGCTTGGAGATGAGGTTTACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgttgtgctgcagctgctgctaaactgatattttgcctcagtcattaatgtgaactaataatatatactttttctacatgagaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG