Sequence
atgc intronic sequence ATGC exonic sequenceGTCGGCCCGCGATTCTGCTTGAACCCAATTAAAATATTTGGTGGCAGTTTTGGAGGCCCAACTTTATACGAGAATCCACTCTATGTGTCACCGAATCAGgtacttaccaatatattttccatctatatttataatttcccaagctttccactttctaactatgtatcatcattggttgctggttcttatag
Basic information
species | Glycine max |
transcript | GLYMA18G51310.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G51310.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g37870.1 (Oryza sativa), 5'ss of exon 7
GTCGGCCCGCGATTCTGCTTGAACCCAATTAAAATATTTGGTGGCAGTTTTGGAGGCCCAACTTTATACGAGAATCCACTCTATGTGTCACCGAATCAGgtac-------ttaccaatatattttccatctatatttataatttcccaagctttccactttctaactatgtatcatcattggttgctggttcttatag---
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GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttttttaccaccaattgattgctgtgtatgtacaatacat--atttctgagcatcttaggtgagcacctgaaaatgttaaagcaatctaggtttg
upper sequence: GLYMA18G51310.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G160458_T01 (Zea mays), 5'ss of exon 7
GTCGGCCCGCGATTCTGCTTGAACCCAATTAAAATATTTGGTGGCAGTTTTGGAGGCCCAACTTTATACGAGAATCCACTCTATGTGTCACCGAATCAGgtac-tta--ccaatatattttccatct-atatttataatttccca-agctttccacttt--ctaactatgtatcatcattggttgctggttcttatag-
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GTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTTGGTGGTCCTACATGGTATGAGAACCCATACTACATTTCCCCCAATCAGgtatgttaattcactgttctgaacttctgatgttgagtgttgttcataagtttcaacccaggttaattacttttcatcaagggctagttgataccgtgtt
upper sequence: GLYMA18G51310.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G168176_T02 (Zea mays), 5'ss of exon 7
GTCGGCCCGCGATTCTGCTTGAACCCAATTAAAATATTTGGTGGCAGTTTTGGAGGCCCAACTTTATACGAGAATCCACTCTATGTGTCACCGAATCAGgtacttaccaatatattttccatctatatttataatttcccaagctttccactttctaactatgtatcatcattggttgctggttcttatag
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GTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTTGGTGGTCCTACATGgtatgagaacccatactacatttcccccaatcaggtg--tgataatccgttgttctgttgt-cctgtactgttcataagtttgaatatatttg-taggtgttag----------------------
upper sequence: GLYMA18G51310.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G168176_T01 (Zea mays), 5'ss of exon 7
GTCGGCCCGCGATTCTGCTTGAACCCAATTAAAATATTTGGTGGCAGTTTTGGAGGCCCAACTTTATACGAGAATCCACTCTATGTGTCACCGAATCAGgtacttaccaatatattttccatctatatttataatttcccaagctttccac---tttctaactat--gtatcatcattggttgctggttcttatag------
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GTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTTGGTGGTCCTACATGGTATGAGAACCCATACTACATTTCCCCCAATCAGgtg--tgataatccgttgttctgttgt-cctgtactgttcataagtttgaatatatttgtaggtgttagtgctatactctaaaggcaacccagataattactt
upper sequence: GLYMA18G51310.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0005g04550.t01 (Vitis vinifera), 5'ss of exon 7
GTCGGCCCGCGATTCTGCTTGAACCCAATTAAAATATTTGGTGGCAGTTTTGGAGGCCCAACTTTATACGAGAATCCACTCTATGTGTCACCGAATCAGgt-acttaccaatatattttccatctatat-ttataatttcccaagctttcc---actttctaactat----gtatcatcattggttgctg--gttcttatag--------------------------------------------------------------
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GTTGGTCCAAGATTTTGTTTGAATCCCATCAAGATATTTGGTGGCAGCTTTGGAGGCCCAACATTATATGAGAATCCATTTTACATATCACCGAATGAGgttataaactccttcatgttcctgtagaatgtttccatttcgtaaattttgtttgatgttctggggatcctgatgtgtgcattgatggtagaggttactgcagctccttttctctgttacaatagtcttactggtgcattgttcttatgctatttatgcttccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151404906|gb|EV274720.1|EV274720EST: TTGGAGGCCCAACTTTATACGAGAATCCACTCTATGTGTCACCGAATCAG ATTCGAGCTTTGGAGAAAAAGAAGAAG-CCGGAAAGTTTGCAAAGAAAGTC
genomic: TTGGAGGCCCAACTTTATACGAGAATCCACTCTATGTGTCACCGAATCAGgtacttacca ... gttcttatagATTCGAGCTTTGGAGAAAAAGAAGAAGGCCGGAAAGTTTGCAAAGAAGGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCGGCCCGCGATTCTGCTTGAACCCAATTAAAATATTTGGTGGCAGTTTTGGAGGCCCAACTTTATACGAGAATCCACTCTATGTGTCACCGAATCAGgtacttaccaatatattttccatctatatttataatttcccaagctttccactttctaactatgtatcatcattggttgctggttcttatag
- - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG