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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATCCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTCAGTGTTCACAAACAGACCAAATGgttaggagctaagcggttaattattttttagataataaattatcgttgtagtttttgcaagtattagtgttcaatgcttacctaatttcaattatgttattatattgacaattttggtttttccctcttag

Basic information

species Glycine max
transcript GLYMA18G01710.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G01710.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G67850.2 (Arabidopsis thaliana), 5'ss of exon 7
CTATCCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTCAGTGTTCACAAACAGACCAAATGgttaggagctaagcggttaattatttttta-gataataaattatcgttgtagtttttgcaagtattagtgttcaatgcttacctaatttcaattatgttattatattgacaattttggtttttccctcttag
||||  | || ||||| ||||| |||||    ||||| ||||||||||||||||||||||||   ||||| ||  | || || |  || ||||| |||||||      | || || |   ||||| |||| | ||  ||||  |  |||  || |||   | || |      |   ||  ||||      || ||| |||                                
CTATTGTCCTGTTTCACTATGACGGCCGGGTAACTGAGTGGGATGAGTTTGAATGGTCAAAGACTGCTATACACATTAGCGTACGAAAGCAGACAAAATGgt-----accaaacgctct-ttattctttatggtagaaaatagt--ttggtgtgtttatgactactgactcccttggc--acctgg----aaatatattag-------------------------------

upper sequence: GLYMA18G01710.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0187g00030.t01 (Vitis vinifera), 5'ss of exon 3
CTATCCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTCAGTGTTCACAAACAGACCAAATGgttaggagctaa-gcggttaattattttttagataataaattatcgttgtagtttttgcaagtattagtgttcaatgct-tacctaatttcaattatgttattatattgacaattttggtttttccctcttag
| ||||| ||||||||||||||||| | ||| |||||||||||||| ||||| |||||||||  ||| |||||||| || ||||  | ||| || ||||||| |||||||   ||     |||||||||  ||  | || || ||  | |  || | | | || | | |   | ||| | |   | |||    | |  | ||| | |   ||||||||   |           
CCATCCTTCTATTTCATTATGATGGTCAAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTCGGAGACAAACAAAATGgtaaggagcttctgcaaaggattattttt--gaacagaagtt-tcacttt--ttctggtaggtttcaataagctatggtctgttttattcttttaacttcattcttt--gcaattttgtcctag---------

upper sequence: GLYMA18G01710.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 7
CTATCCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTCAGTGTTCACAAACAGACCAAATGgttaggagctaa-gcggttaattattttttagataataaattatcgttgtagtttttgcaagtattagtgttcaatgct-tacctaatttcaattatgttattatattgacaattttggtttttccctcttag
| ||||| ||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||  ||| |||||||| || ||||  | ||| || ||||||| |||||||   ||     |||||||||  ||  | || || ||  | |  || | | | || | | |   | ||| | |   | |||    | |  | ||| | |   ||||||||   |           
CCATCCTTCTATTTCATTATGATGGTCGAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTCGGAGACAAACAAAATGgtaaggagcttctgcaaaggattattttt--gaacagaagtt-tcacttt--ttctggtaggtttcaataagctatggtctgttttattcttttaacttcattcttt--gcaattttgtcctag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15661819|gb|BI699190.1|BI699190
EST:     GAATGGTCAAAGCAGGCTATTCATGTCAGTGTTCACAAACAGACCAAATG                         GTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
genomic: GAATGGTCAAAGCAGGCTATTCATGTCAGTGTTCACAAACAGACCAAATGgttaggagct ... tccctcttagGTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
EST: gi|192319061|gb|FK010625.1|FK010625
EST:     GAATGGTCAAAGCAGGCTATTCATGTCAGTGTTCACAAACAGACCAAATG                         GTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
genomic: GAATGGTCAAAGCAGGCTATTCATGTCAGTGTTCACAAACAGACCAAATGgttaggagct ... tccctcttagGTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA