1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTAGAGCTCTTATCTCAAGGCTGACTGAAGAAAAGAATAATGCAATTCAACAAAATAGCAAGCTCTGCCAGGAACTGgtgagaatttacagtatgtcattgataattttatttacttatttgtctaatctatatttattttccttttggtgatggaggattttaatctggaatatga...
species | Glycine max |
transcript | GLYMA17G15010.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGAAAAGAATAATGCAATTCAACAAAATGGCAAGCTCTGCCAGGAACTG GAGCTACTGAAGAGEST: gi|15204339|gb|BI427107.1|BI427107
genomic: AAGAAAAGAATAATGCAATTCAACAAAATAGCAAGCTCTGCCAGGAACTGgtgagaattt ... ctacctgtagGAGCTACTGAAGAG
EST: AAGAAAAGAATAATGCAATTCAACAAAATAGCAAGCTCTGCCAGGAACTG GAGCTACTGAAGAGGGAAGGCAACAAAAGTCGTGGTGGAGTCTCATTTGTCEST: gi|192308379|gb|FK000903.1|FK000903
genomic: AAGAAAAGAATAATGCAATTCAACAAAATAGCAAGCTCTGCCAGGAACTGgtgagaattt ... ctacctgtagGAGCTACTGAAGAGGGAAGGCAACAAAAGTCGTGGTGGAGTCTCATTTGTC
EST: AAGAAAAGAATAATGCAATTCAACAAAATAGCAAGCTCTGCCAGGA-CTG GAGCTACTGAAGAGEST: gi|192320145|gb|FK012633.1|FK012633
genomic: AAGAAAAGAATAATGCAATTCAACAAAATAGCAAGCTCTGCCAGGAACTGgtgagaattt ... ctacctgtagGAGCTACTGAAGAG
EST: AAGAAAAGAATAATGCAATTCAACAAAATAGCAAGCTCTGCCAGGAACTG GAGCTACTGAAGAGGGAAG-CAACAAAAGTCGTGGTGGAGTCTCATTTGTCEST: gi|6914978|gb|AW396508.1|AW396508
genomic: AAGAAAAGAATAATGCAATTCAACAAAATAGCAAGCTCTGCCAGGAACTGgtgagaattt ... ctacctgtagGAGCTACTGAAGAGGGAAGGCAACAAAAGTCGTGGTGGAGTCTCATTTGTC
EST: AAGAAAAGAATAATGCAATTCAACAAAATAGCAAGCTCTGCCAGGAACTG GAGCTACTGAAGAGGGAAGGCAACAAAAGTCGTGGTGGAGTCTCATTTGTCEST: gi|10236074|gb|BE805022.1|BE805022
genomic: AAGAAAAGAATAATGCAATTCAACAAAATAGCAAGCTCTGCCAGGAACTGgtgagaattt ... ctacctgtagGAGCTACTGAAGAGGGAAGGCAACAAAAGTCGTGGTGGAGTCTCATTTGTC
EST: AAGAAAAGAATAATGCAATTCAACAAAATAGCAAGCTCTGCCAGGAACTG GAGCTACTGAAGAGGGAAGGCAACAAAAGTCGTGGTGGAGTCTCATTTGTCEST: gi|208054916|gb|GD851071.1|GD851071
genomic: AAGAAAAGAATAATGCAATTCAACAAAATAGCAAGCTCTGCCAGGAACTGgtgagaattt ... ctacctgtagGAGCTACTGAAGAGGGAAGGCAACAAAAGTCGTGGTGGAGTCTCATTTGTC
EST: GAAAAGAATAATGCAATTCAACAAAATAGCAAGCTCTGCCAGGAACTG GAGCTACTGAAGAGGGAAGGCAACAAAAGTCGTGGTGGAGTCTCATTT
genomic: GAAAAGAATAATGCAATTCAACAAAATAGCAAGCTCTGCCAGGAACTGgtgagaattt ... ctacctgtagGAGCTACTGAAGAGGGAAGGCAACAAAAGTCGTGGTGGAGTCTCATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAGAGCTCTTATCTCAAGGCTGACTGAAGAAAAGAATAATGCAATTCAACAAAATAGCAAGCTCTGCCAGGAACTGgtgagaatttacagtatgtcattgataattttatttacttatttgtctaatctatatttattttccttttggtgatggaggattttaatctggaatatga
- - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT