1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TACTTAGACAGGCCAGGGGTTAGTTTTTGTACCCGAACTACGTATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAGgtccttcttcttttctttcttattatccttttccttgatttttttggtttgcaagttgtttgagcaatcactgtgctcaaccctcaaatagggcttcttactaatgattgataaatctatcag
species | Glycine max |
transcript | GLYMA15G12980.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAG TGGAGCTGTTCATCTCATGGCTTCAAACAATGACTCTGGAGTTAGAGACTTEST: gi|17024037|gb|BM095071.1|BM095071
genomic: TATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAGgtccttcttc ... aatctatcagTGGAGCTGTTCATTTCATGGCTTCAAACAATGACTCTGGAGTTAGAGACTT
EST: TATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAG TGGAGCTGTTCATTTCATGGCTTCAAACAATGACTCTGGAGTTAGAGACTTEST: gi|58016977|gb|CX703719.1|CX703719
genomic: TATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAGgtccttcttc ... aatctatcagTGGAGCTGTTCATTTCATGGCTTCAAACAATGACTCTGGAGTTAGAGACTT
EST: TATGAGGACAATGCATTCACAAATGCTGTGGAGATTTATGAGCACCCAAG TGGAGCTGTTCATTTCAT-GCTTTCAAACAATGACTCTGGAGTTAGAGACTEST: gi|58016661|gb|CX703403.1|CX703403
genomic: TATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAGgtccttcttc ... aatctatcagTGGAGCTGTTCATTTCATGGC-TTCAAACAATGACTCTGGAGTTAGAGACT
EST: TGTGGAGATTTATGAGCACCCAAG TGGAGCTGTTCATTTCATGGCTTCAAACAATGACTCTGGAGTTAGAGACTT
genomic: TGTGGAGATTTATGAGCACCCAAGgtccttcttc ... aatctatcagTGGAGCTGTTCATTTCATGGCTTCAAACAATGACTCTGGAGTTAGAGACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTTAGACAGGCCAGGGGTTAGTTTTTGTACCCGAACTACGTATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGAGCACCCAAGgtccttcttcttttctttcttattatccttttccttgatttttttggtttgcaagttgtttgagcaatcactgtgctcaaccctcaaatagggcttcttactaatgattgataaatctatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT