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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTAACTCTGCTGTGGGGGCTCTTCTGGTTAGCTTCACCGTGTATGTCATCCCTGCTTGTGCTCATATGCTCACTTACAAGTCTGCTTCTGCACGACAGgtaaaaatagtccaatctcttcatatctcatatttgtttgtttctaccaaatatctgtctcatctaacaatctttactttctatataatgaatttctcta...

Basic information

species Glycine max
transcript GLYMA14G06600.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06600.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0067g00330.t01 (Vitis vinifera), 5'ss of exon 8
TATTAACTCTGCTGTGGGGGCTCTTCTGGTTAGCTTCACCGTGTATGTCATCCCTGCTTGTGCTCATATGCTCACTTACAAGTCTGCTTCTGCACGACAGgtaaaaatagtccaatctcttc---atatctcatatttgtttgtttctaccaaatatctgtctcat-ctaacaatctttactttctatataatgaatttctcta
 ||||| || ||||||||||||||| |||| ||||||||||| ||  ||||||| |||  ||| ||||||||||||||||     || || ||  || ||||||  || | || |||| |||   |  ||| || ||   || |     |   || | |  | ||  || || |   |||||||||      | |||  | |  
CATTAATTCAGCTGTGGGGGCTCTTTTGGTCAGCTTCACCGTCTACATCATCCCAGCTCTTGCCCATATGCTCACTTACAGAAAGGCCTCAGCCAGAAAGgtaa--atggccctatcttttctccacctcttatcttcacttttactggcattatctattacccacactcaccacgcttactttctg-gcccttaatgaccca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298172037|gb|HO021629.1|HO021629
EST:     TCCCTGCTTGTGCTCATATGCTCACTTACAAGTCTGCTTCTGCACGACAG                         AATGCTGCTGAGAAATTGCCCTTCTTCATCCCAAACTGGACGGCAATGTAT
genomic: TCCCTGCTTGTGCTCATATGCTCACTTACAAGTCTGCTTCTGCACGACAGgtaaaaatag ... tatgtttcagAATGCTGCTGAGAAATTGCCCTTCTTCATCCCAAACTGGACGGCAATGTAT
EST: gi|11275139|gb|BF325462.1|BF325462
EST:     TCCCTGCTTGTGCTCATATGCTCACTTACAAGTCTGCTTCTGCACGACAG                         AATGCTGCTGAGAAATTGCCCTTCTTCATCCCAAACTGGACGGCAATGTAT
genomic: TCCCTGCTTGTGCTCATATGCTCACTTACAAGTCTGCTTCTGCACGACAGgtaaaaatag ... tatgtttcagAATGCTGCTGAGAAATTGCCCTTCTTCATCCCAAACTGGACGGCAATGTAT
EST: gi|22933327|gb|BU550466.1|BU550466
EST:     TCCCTGCTTGTGCTGATATGCTCACTTACAAGTCTGCNNCTGCACGACAG                         AATGCTGCTGAGAAATTGCCNTNCTTCATCCCAAACTGGNNNGCAATGTAT
genomic: TCCCTGCTTGTGCTCATATGCTCACTTACAAGTCTGCTTCTGCACGACAGgtaaaaatag ... tatgtttcagAATGCTGCTGAGAAATTGCCCTTCTTCATCCCAAACTGGACGGCAATGTAT
EST: gi|298191309|gb|HO038788.1|HO038788
EST:     TCCCTGCTTGTGCTCATATGCTCACTTACAAGTCTGCTTCTGCACGACAG                         AATGCTGCTGAGAAATTGCCCTTCTTCATCCCAAACTGGACGGCAATGTAT
genomic: TCCCTGCTTGTGCTCATATGCTCACTTACAAGTCTGCTTCTGCACGACAGgtaaaaatag ... tatgtttcagAATGCTGCTGAGAAATTGCCCTTCTTCATCCCAAACTGGACGGCAATGTAT
EST: gi|20498412|gb|BQ273342.1|BQ273342
EST:     TCCCTGCTTGTGCTCATATGCTCACTTACAAGTCTGCTTCTGCACGACAG                         AATGCTGCTGAGAAATTGCCCTTCTTCATCCCAAACTGGACGGCAATGTAT
genomic: TCCCTGCTTGTGCTCATATGCTCACTTACAAGTCTGCTTCTGCACGACAGgtaaaaatag ... tatgtttcagAATGCTGCTGAGAAATTGCCCTTCTTCATCCCAAACTGGACGGCAATGTAT