Sequence
atgc intronic sequence ATGC exonic sequenceGGTTTGCAAAGCGGTTTTTGCATCCAGACATAGTTGCTGAATACAATTATATATTTCTTTGGGATGAGGATCTTCTTGTTGATAATTTTGACCCAAAAAGgtaagccttctatgggagactaggatgatactaaatttagaggtcttagttgactatattagatgaaaaggggtatattctttttttgtttatgggtgattaatttatgcctcatgtatgacttgttgaatatttggtag
Basic information
species | Glycine max |
transcript | GLYMA12G28620.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G28620.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G18530.1 (Arabidopsis thaliana), 5'ss of exon 7
GGTTTGCAAAGCGGTTTTTGCATCCAGACATAGTTGCTGAATACAATTATATATTTCTTTGGGATGAGGATCTTCTTGTTGATAATTTTGACCCAAAAAGgtaagccttctatgggagactaggatgatactaaatttagaggtcttagttgactatattagatgaaaaggggtatattctttttttgtttatgggtgattaatttatgcctcatgtatgacttgttgaatatttggtag
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GGTTCGCCAAGCGATTCTTGCATCCCGATATAGTTGCAGAGTACGAGTATATATTTCTTTGGGACGAAGATCTTGGTGTTGGTCATTTCAATCCTCAACGgtaacac-----------actaa----atatagaattt-gtgttcttttttatcttttttcatttctcattccaatcgttttactttag---------------------------------------------------
upper sequence: GLYMA12G28620.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0035g01350.t01 (Vitis vinifera), 5'ss of exon 7
GGTTTGCAAAGCGGTTTTTGCATCCAGACATAGTTGCTGAATACAATTATATATTTCTTTGGGATGAGGATCTTCTTGTTGATAATTTTGACCCAAAAAGgtaagccttctat--gggagactaggatgatactaaatttagaggtcttagttgactatattagatgaaaaggggtatattctttttttgtttatgggtgattaatttatgcctcatgtatgacttgttgaatatttggtag
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GGTTTGCAAAACGCTTCTTACATCCAGACATAGTTGCTGAATATAATTATATTTTCCTTTGGGATGAAGACCTTGGGGTTGAGAATTTTCATCCAGGACGgtaagtatgatatccataaaacttggttgat--caagtttcaaattcatacttca--agcttgg--gagttgcctcaaaagcttaaactgt-----agtattcaaaacatg-------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208150735|gb|GD949534.1|GD949534EST: ATATTTCTTTGGGATGAGGATCTTCTTGTTGATAATTTTGACCCAAAA-G GTATTTATCTATT
genomic: ATATTTCTTTGGGATGAGGATCTTCTTGTTGATAATTTTGACCCAAAAAGgtaagccttc ... tatttggtagGTATTTATCTATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTTTGCAAAGCGGTTTTTGCATCCAGACATAGTTGCTGAATACAATTATATATTTCTTTGGGATGAGGATCTTCTTGTTGATAATTTTGACCCAAAAAGgtaagccttctatgggagactaggatgatactaaatttagaggtcttagttgactatattagatgaaaaggggtatattctttttttgtttatgggtgattaatttatgcctcatgtatgacttgttgaatatttggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT