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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGTCAAACTTGCTGATTTTGGTGTTGCTACAAAATTAACAGAGGCTGATGTTAACACTCATTCAGTTGTTGGAACACCTTACTGGATGGCCCCAGAGgtattaactgtgtgatgttcttctgctaaatcatttgcttagaacttttaataggttccgtgttcaaattgtgttctaacaccagaatgatataaggagt...

Basic information

species Glycine max
transcript GLYMA12G03090.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03090.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0011g02270.t01 (Vitis vinifera), 5'ss of exon 7
TCTTGTCAAACTTGCTGATTTTGGTGTTGCTACAAAATTAACAGAGGCTGATGTTAACACTCATTCAGTTGTTGGAACACCTTACTGGATGGCCCCAGAGgtattaactgtgtgatgttcttctgctaaatcatttgcttagaacttttaataggttccgtgttcaaattgtgtt--ctaacaccagaatgatataaggagt--
|||||| ||||||||||| ||||||||||| ||||||||||| ||||| |||||||| || ||||| |||||||| ||||| || ||||||||||| ||||||  |  |||  | ||||||| |   ||   || |     ||| ||||  |    |   | || |||  ||  |  |||||   |   | | ||   |  |  
TCTTGTGAAACTTGCTGACTTTGGTGTTGCAACAAAATTAACTGAGGCAGATGTTAATACGCATTCCGTTGTTGGGACACCATATTGGATGGCCCCTGAGgtac-atttgta-gttgttctttta--aatgtatgtagagtgaagttttgttcttattgatattgaaagagttcttgctaactttaatttaaaattttgtatta

upper sequence: GLYMA12G03090.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S131_142V6.1 (Physcomitrella patens), 5'ss of exon 7
TCTTGTCAAACTTGCTGATTTTGGTGTTGCTACAAAATTAACAGAGGCTGATGTTAACACTCATTCAGTTGTTGGAACACCTTACTGGATGGCCCCAGAGgt-attaactgtgtgatgttcttctgctaaatcatttgcttagaacttttaataggttccgtgttcaaattgtgttctaacaccagaatgatataaggagt--------------------------------------
    || ||||| || |||||||| ||||| || |||||||| ||||||||  | ||||||||||| |||||||| |||||||| |||||||| || ||||| | |     | |||    |||  | |   || ||     || ||||| | |     | ||||   ||||   ||||| || || | | ||   || |||                                      
AGAGGTAAAACTCGCAGATTTTGGAGTTGCCACCAAATTAACCGAGGCTGACATCAACACTCATTCTGTTGTTGGTACACCTTATTGGATGGCTCCTGAGgtcagtggtgttctgaacagctttggttttctctttacggaaggactttcatt----ccagtgtcgtaattc--ttctatcatcaaatttattctagaagtgtcccagggaatcattaacggaatagtttatctgacag

upper sequence: GLYMA12G03090.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S66_286V6.1 (Physcomitrella patens), 5'ss of exon 7
TCTTGTCAAACTTGCTGATTTTGGTGTTGCTACAAAATTAACAGAGGCTGATGTTAACACTCATTCAGTTGTTGGAACACCTTACTGGATGGCCCCAGAGgt-----attaactgtgtga---tgttcttctgctaaatca----tttgcttagaacttttaatag-gttccgtgttcaaattgtgttctaacaccagaatgatataaggagt---------------------------
    || ||||| || |||||||| ||||| || |||||||| ||||||||  | ||||||||||| |||||||| || ||||| |||||||| || |||||     |||  |||    |   |||| ||||  | | |      ||| | ||  | | |   ||   ||| ||    |||||   || |    |  | | | |  || ||||                           
GGAGGTGAAACTCGCAGATTTTGGAGTTGCCACCAAATTAACCGAGGCTGACATCAACACTCATTCTGTTGTTGGCACTCCTTATTGGATGGCTCCTGAGgtcagtgattttctgcccaacattgtttttctttttagtagaggtttttcatattagtatagctactattctgtcactaaatttgcttatttatcgtggacgtttcaaagagtagctgacagaaatagttaatctgtcag