1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGACTTCACAAATCTTTTAAAGAAAATCAGTATCCAGATAGAACCACAAAAGAAAGCTTGGCACAAGAACTTGGACTTACTTATCAGCAGgtcatatcttttagtttttcactttcagtgaacacattttatttttctcgtgactttctgaatttaccattctttttcactcag
species | Glycine max |
transcript | GLYMA10G40640.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAACCACAAAAGAAAGCTTGGCACAAGAACTTGGACTTACTTATCAGCAG GTTGCCAAATGGTTTGGCAATACACGTTGGAGCTTCCGGCATTCATCACAAEST: gi|192299920|gb|FG991794.1|FG991794
genomic: GAACCACAAAAGAAAGCTTGGCACAAGAACTTGGACTTACTTATCAGCAGgtcatatctt ... tttcactcagGTTGCCAAATGGTTTGGCAATACACGTTGGAGCTTCCGGCATTCATCACAA
EST: GAACCACAAAAGAAAGCTTGGCACAAGAACTTGGACTTACTTATCAGCAG GTTGCCAAATGGTTTGGCAATACACGTTGGAGCTTCCGGCATTCATCACAAEST: gi|254331397|gb|GR843409.1|GR843409
genomic: GAACCACAAAAGAAAGCTTGGCACAAGAACTTGGACTTACTTATCAGCAGgtcatatctt ... tttcactcagGTTGCCAAATGGTTTGGCAATACACGTTGGAGCTTCCGGCATTCATCACAA
EST: AAAAGAAAGCTTGGCAC-AGAAC-TGGACTTACTTATCAGCAG GTTGCCAAATGGTTTGGCAATACACGTTGGAGCTTCCGGCATTCATCACAA
genomic: AAAAGAAAGCTTGGCACAAGAACTTGGACTTACTTATCAGCAGgtcatatctt ... tttcactcagGTTGCCAAATGGTTTGGCAATACACGTTGGAGCTTCCGGCATTCATCACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACTTCACAAATCTTTTAAAGAAAATCAGTATCCAGATAGAACCACAAAAGAAAGCTTGGCACAAGAACTTGGACTTACTTATCAGCAGgtcatatcttttagtttttcactttcagtgaacacattttatttttctcgtgactttctgaatttaccattctttttcactcag
- - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC