1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTTGAGAAAGGAAGGGTTGTCATATTTGGTGGTGTTGGTGCTGGCACTGGAAATCCACTTTTTACCACTGATACAGCTGCAGCTCTCAGAGCTTCTGAGCgtacgaccttgcacttccactttagcatttcatctttagttttgttgtttttatatctgttctaatcatgtcttccattatattagcagccttgctcacatctgtatagtatgcttggtgcttgagtaggagtgaattttgactttcttccaaccatgtattttttcccag
species | Glycine max |
transcript | GLYMA10G34520.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTTTACCACTGATACAGCTGCAGCTCTCAGAGCTTCTGAGC TTAATGCTGATGCGGTTCTGAAAGGTACTAATGTGAATGGCGTCTTTGACTEST: gi|10253039|gb|BE820805.1|BE820805
genomic: TTTTACCACTGATACAGCTGCAGCTCTCAGAGCTTCTGAGCgtacgacctt ... tttttcccagTTAATGCTGATGCGGTTCTGAAAGGTACTAATGTGAATGGCGTCTTTGACT
EST: AAATCCACTTTTTACCACTGATACAGCTGCAGCTCTCAGAGCTTCTGAGC TTAATGCTGATGCGGTTCTGAAAGGTACTAATGTGAATGGCGTCTTTGACTEST: gi|7284598|gb|AW597185.1|AW597185
genomic: AAATCCACTTTTTACCACTGATACAGCTGCAGCTCTCAGAGCTTCTGAGCgtacgacctt ... tttttcccagTTAATGCTGATGCGGTTCTGAAAGGTACTAATGTGAATGGCGTCTTTGACT
EST: AAATCCACTTTTTACCACTGATACAGCTGCAGCTCTCAGAGCTTCTGAGC TTAATGCTGATGTGGTTCTGAAAGGTACTAATGTGAATGGCGTCTTTGACT
genomic: AAATCCACTTTTTACCACTGATACAGCTGCAGCTCTCAGAGCTTCTGAGCgtacgacctt ... tttttcccagTTAATGCTGATGCGGTTCTGAAAGGTACTAATGTGAATGGCGTCTTTGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGAGAAAGGAAGGGTTGTCATATTTGGTGGTGTTGGTGCTGGCACTGGAAATCCACTTTTTACCACTGATACAGCTGCAGCTCTCAGAGCTTCTGAGCgtacgaccttgcacttccactttagcatttcatctttagttttgttgtttttatatctgttctaatcatgtcttccattatattagcagccttgctcacatctgtatagtatgcttggtgcttgagtaggagtgaattttgactttcttccaaccatgtattttttcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT