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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAACGATGATGAGGTGGAACTATGGGTGGTTAGAGGATTAACTGCTAAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAGgtatgttctacctctattgtctctcagctgcctactgtctttccctactctgtgggcacatggacttgcacagttgcacctattggccacatttatttttgttcagcatcatatatccccccatgttgaaaattcatttagctgttatccatgatttaatttataatgcaaatatttaatgtgcag

Basic information

species Glycine max
transcript GLYMA10G28080.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28080.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0068g00220.t01 (Vitis vinifera), 5'ss of exon 8
ATCAACGATGATGAGGTGGAACTATGGGTGGTTAGAGGATTAACTGCTAAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAGgtatgttctacctctattgtctctcagctgcctactgtctttccctactctgtgggcacatggacttgcacagttgcacctattggccacatttatttttgttcagcatcatatatccccccatgttgaaaattcatttagctgttatccatgatttaatttataatgcaaatatttaatgtgcag
|| | ||||||||||||||||| |||||||||| | | |||||| || ||||| || ||||||||||||||||||||||||||||| |||| ||||| || | | || || | | | ||| || | ||| | | | | || | | | |||| |||| || || |||| | || || | | || || | || | |
ATTGATGATGATGAGGTGGAACTCTGGGTGGTTAAGGCAATAACTGTGAAATTAATGGATTGTAAGATGGACCAAATGAATCAAGTTGTGCTTGTGAGgta----ctccattta--gttccctttttagtttctgatttattccactttcagcaaagaaagatt----ccactacacc-attgacc---ttgatttata--cactattaactggtttcc---atttgggtctgatatgagtag-----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208169199|gb|GD969582.1|GD969582
EST:     AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAG                         TCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
genomic: AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAGgtatgttcta ... taatgtgcagTCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
EST: gi|16341820|gb|BI967415.1|BI967415
EST:     AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAG                         TCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
genomic: AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAGgtatgttcta ... taatgtgcagTCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
EST: gi|31467514|gb|CD409542.1|CD409542
EST:     AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAG                         TCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
genomic: AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAGgtatgttcta ... taatgtgcagTCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
EST: gi|120529357|gb|EH257491.1|EH257491
EST:     AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAG                         TCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
genomic: AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAGgtatgttcta ... taatgtgcagTCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
EST: gi|9900501|gb|BE609469.1|BE609469
EST:     AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAG                         TCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
genomic: AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAGgtatgttcta ... taatgtgcagTCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
EST: gi|4260100|gb|AI416596.1|AI416596
EST:     AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAG                         TCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
genomic: AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAGgtatgttcta ... taatgtgcagTCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
EST: gi|57574088|gb|CX547063.1|CX547063
EST:     AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAG                         TCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
genomic: AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAGgtatgttcta ... taatgtgcagTCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
EST: gi|193450760|gb|FK411270.1|FK411270
EST:     GAATCAAGTTGTAGTTGTCAG                         TCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
genomic: GAATCAAGTTGTAGTTGTCAGgtatgttcta ... taatgtgcagTCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
EST: gi|192328118|gb|FK022842.1|FK022842
EST:     AAGTTAATTGACTGTAAGGTGGACCAAATGAATCAAGTTGTAGTTGTCAG                         TCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
genomic: AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAGgtatgttcta ... taatgtgcagTCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
EST: gi|9900510|gb|BE609478.1|BE609478
EST:     AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAG                         TCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
genomic: AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAGgtatgttcta ... taatgtgcagTCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
EST: gi|208043275|gb|GD840553.1|GD840553
EST:     AACTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAG                         TCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCA
genomic: AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAGgtatgttcta ... taatgtgcagTCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCA
EST: gi|120529461|gb|EH257595.1|EH257595
EST:     AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAG                         TCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
genomic: AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAGgtatgttcta ... taatgtgcagTCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
EST: gi|7326454|gb|AW620263.1|AW620263
EST:     AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAG                         TCATCCTACTGAGCGTGTGTNTGGTCAGCACCAATGGCAAGCACTGAGAAC
genomic: AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAGgtatgttcta ... taatgtgcagTCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
EST: gi|208295128|gb|GE091265.1|GE091265
EST:     AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAG                         TCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC
genomic: AAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAGgtatgttcta ... taatgtgcagTCATCCTACTGAGCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCAACGATGATGAGGTGGAACTATGGGTGGTTAGAGGATTAACTGCTAAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTAGTTGTCAGgtatgttctacctctattgtctctcagctgcctactgtctttccctactctgtgggcacatggacttgcacagttgcacctattggccacatttatttttgttcagcatcatatatccccccatgttgaaaattcatttagctgttatccatgatttaatttataatgcaaatatttaatgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA