Sequence
atgc intronic sequence ATGC exonic sequenceAAGAAGCAGTTGAGAAAGATGCTACAAAGACTGCAGTAACTGATGGAACTGTCCATCCTTTGACAAGCTATGTGATTAACTATGTGAAGTTTTTATTTGAgtaagttcatttctgctgtattctgcttcaaattctcgagcgcactcatgaagttatgtctagcattgtatattgttttaattggtgagaaagctgcgtc...
Basic information
species | Glycine max |
transcript | GLYMA10G23810.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G23810.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os11g05880.1 (Oryza sativa), 5'ss of exon 7
AAGAAGCAGTTGAGAAAGATGCTACAAAGACTGCAGTAACTGATGGAACTGTCCATCCTTTGACAAGCTATGTGATTAACTATGTGAAGTTTTTATTTGAgtaagttcatttctgctgtattctgcttcaaattctcgagcgcactcatgaagttatgtctagcatt-gtatattgttttaattggtgagaaagctgcgtc
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AGGAGGCTGTTGAAAAGGATGCTTCGAAGACTATTGTTAATGATGGAACTGTGCATCCTTTGACTAGCTATGTGATTAATTATGTTAAATTCTTATTTGAgtaagtac-tcacttttaacttagtattcaaattcatggacatgtagattcgtaaatcactacaatttgagtgaggtatggtacaatgatcgcgatgagta
upper sequence: GLYMA10G23810.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os04g58880.1 (Oryza sativa), 5'ss of exon 7
AAGAAGCAGTTGAGAAAGATGCTACAAAGACTGCAGTAACTGATGGAACTGTCCATCCTTTGACAAGCTATGTGATTAACTATGTGAAGTTTTTATTTGAgtaagt------tcatttctgctgtattctgcttcaaattctcgagc-gcactcatgaagttatgtctagcattgtatatt-gttttaattggtgagaaagctgcgtc
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AAGAAGCTGTTGAAAAGGACGCAACAAAGAATATTCATATTGATGGGACAGTGCATCCTTTGACGAGCTACGTGATTAACTATGTCAAATTTTTATTTGAgtaagtatatgatcatgtgcacttaatctttcctgtaatttgatagttgcattgctatactt---tcttgcatttcttcttcaatcctatccaccagtatgct-----
upper sequence: GLYMA10G23810.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os12g06270.1 (Oryza sativa), 5'ss of exon 7
AAGAAGCAGTTGAGAAAGATGCTACAAAGACTGCAGTAACTGATGGAACTGTCCATCCTTTGACAAGCTATGTGATTAACTATGTGAAGTTTTTATTTGAgtaagt-tcatttctgctgtattctgcttcaaattctcgagc-gcactcatgaagtta-tgtctagcattgtatattgttttaattggtgagaaagctgcgtc
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AGGAGGCAGTTGAAAAGGATACTTCCAAGACTATTGTGCAGGATGGGACGGTCCATCCTTTGACTAGCTATGTTATTAATTATGTCAAATTTCTATTTGAgtaagtatcactattaccacattcttggacatgtagaagatttgtgtgactgtagtaactagttgcaatcacaaatagttttaacacat---atcttcgagta
upper sequence: GLYMA10G23810.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G074530_T01 (Zea mays), 5'ss of exon 1
AAGAAGCAGTTGAGAAAGATGCTACAAAGACTGCAGTAACTGATGGAACTGTCCATCCTTTGACAAGCTATGTGATTAACTATGTGAAGTTTTTATTTGAgtaagttcatttctgctgtattctgcttcaaattctcgagcgcactcatgaagttatgtctagcattgtatattgttttaattggtgagaaagctgcgtc--------
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AAGAAGCTGTTGAAAAGGATGCAACAAAGAATATTCATACTGATGGAACAGTTCATCCTTTAACAAGCTATGTGATCAACTATGTTAAGTTTTTGTTTGAgtaagta----tctaatcaaatccgcatgcaatttatg--tgttgttataaatgaataggt-gtacaagat-ttgtccttatccatgtgcctttccttttctaattat
upper sequence: GLYMA10G23810.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G03540.3 (Arabidopsis thaliana), 5'ss of exon 8
AAGAAGCAGTTGAGAAAGATGCTACAAAGACTGCAGTAACTGATGGAACTGTCCATCCTTTGACAAGCTATGTGATTAACTATGTGAAGTTTTTATTTGAgtaagt---tcatttctgctgtattc--tgcttcaaattctcgagcgcact---------catgaagttatgtctagcattgtatatt-----gttttaattggtgagaaagctgcgtc--
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AAGAAGCTGTTGAGAAAGATGCTACAAAGACTGCTGTTCTAGATGGAACTGTCCACCCACTAACAAGCTATGTCATCAATTATGTCAAGTTTTTATTCGAgtaagtacatcatatatactcaacttatttcctcgaactattt-gcgtattgttcttctccatactgctat-ttgcgtattgtccctttccacgctttaattgatgatcat-tggtgtcag
upper sequence: GLYMA10G23810.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0073g00170.t01 (Vitis vinifera), 5'ss of exon 7
AAGAAGCAGTTGAGAAAGATGCTACAAAGACTGCAGTAACTGATGGAACTGTCCATCCTTTGACAAGCTATGTGATTAACTATGTGAAGTTTTTATTTGAgtaagttcatttctgctgtattctgcttcaaattctcgagcgcactcatgaagttatgtctagcattgtatattgttttaattggtgagaaagctgcgtc---
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AAGAAGCAGTTGAAAAAGATGCAACAAAAACTGCTGTGTCTGATGGAACTGTTCATCCTTTGACAAGCTATGTGATCAACTATGTGAAGTTTCTTTTTGAgtaagcccctctg-actgtgttgctatcttctagctccattcttttgggcaag--acagataacagtttcatccatgctaattggtggtatttctattagggtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16995992|gb|BM085364.1|BM085364EST: GTCCATCCTTTGACAAGCTATGTGATTAACTATGTGAAGTTTTTATTTGA CTATCGATCTACTTTACACCAACTTTTTCAAGGAATTGAAGGTGAAGGTGA
genomic: GTCCATCCTTTGACAAGCTATGTGATTAACTATGTGAAGTTTTTATTTGAgtaagttcat ... atatttgcagCTATCGATCTACTTTACACCAACTTTTTCAAGGAATTGAAGGTGAAGGTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGAAGCAGTTGAGAAAGATGCTACAAAGACTGCAGTAACTGATGGAACTGTCCATCCTTTGACAAGCTATGTGATTAACTATGTGAAGTTTTTATTTGAgtaagttcatttctgctgtattctgcttcaaattctcgagcgcactcatgaagttatgtctagcattgtatattgttttaattggtgagaaagctgcgtc
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