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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtaccttgttgatattggttctgtttctatctcatatacctgaatattccagatgactgacattttgttattgtgtgtttgttttttcaatag

Basic information

species Glycine max
transcript GLYMA10G06580.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G06580.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g41590.1 (Oryza sativa), 5'ss of exon 7
GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtaccttgttgatattggttctgtttctatc--tcatatacctgaatattccagatgactgacattttgttattgtgtgtttgttttttcaatag-----
 || || ||||| ||||||||||| ||||| |||||||| ||||||||| ||| || |||||| || |||||| ||||||  || |||| ||    |  | || |  |   || |||  | |  | |  |  ||   ||  | |    ||      |   ||  ||    |      
ATCACTGGTTGCAAACTTATCAGCAGCAAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAGgtaatttattgagatattctgagctttttgccaccacatatttcatcacttaatttgggggatttctgtgcatatcagctgcattaattgtgcaaactct

upper sequence: GLYMA10G06580.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 7
GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtaccttgttgatattggttctgtttctatctcatatacctgaatattccagatgactgacattttgttattgtgtgtttgttttttcaatag
||| ||  ||||||||||||| |||||||||||||||||||| || || |||| ||| || ||||| |||||||||||||  || ||    ||  |  || ||||||  | | |   |   |||   | |||    || || | || |  |     |  | |||  | ||
GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgta--ttattttctttcttgatgcttctattccttgtttgttgctatataacatgttgaactttcttttttatttaaactcctattttgacag

upper sequence: GLYMA10G06580.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0019g04470.t01 (Vitis vinifera), 5'ss of exon 7
GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtaccttgttgatattggttctgtttctatctcatatacctgaatattccagatgactgacattttgttattgtgtgtttgttttttcaatag
||| ||  ||||||||||||| ||||||||||||||||||||||| ||||||| ||| || ||||| |||||| ||||||  || ||    ||  |  || ||||||  | | |   |   |||   | |||    || || | || |  |     |  | |||  | ||
GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACATTTGAAGAGGCCTGAAAACTGGGCACTAGgta--ttattttctttcttgatgcttctattccttgtttgttgctatataatatgctgaactttcttttttatttaaactcctattttgacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8284137|gb|BE021696.1|BE021696
EST:     AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTACTACATTTGTGGCTCTCTCCTCACTGTATCTC
genomic: AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtaccttgtt ... ttttcaatagTTGAAAAGGCCAAGTATTACTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|6454402|gb|AW185085.1|AW185085
EST:     AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAA-TTGGGCATTAG                         TTGAAAAGGCCA-GTATTACTACATTTCTGGGCTTTT-CCTCACTGTATCT
genomic: AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtaccttgtt ... ttttcaatagTTGAAAAGGCCAAGTATTACTACATTTCTGG-CTTTTTCCTCACTGTATCT
EST: gi|213618065|gb|DB963698.1|DB963698
EST:     AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTACTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtaccttgtt ... ttttcaatagTTGAAAAGGCCAAGTATTACTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|12689938|gb|BG156274.1|BG156274
EST:     AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTACTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtaccttgtt ... ttttcaatagTTGAAAAGGCCAAGTATTACTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|17022031|gb|BM093065.1|BM093065
EST:     AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTACTACATT
genomic: AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtaccttgtt ... ttttcaatagTTGAAAAGGCCAAGTATTACTACATT
EST: gi|193336544|gb|FK299032.1|FK299032
EST:     GGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTACTACATTTCTGGC-TTTTCCTCACTGTATCTC
genomic: GGAAAATTGGGCATTAGgtaccttgtt ... ttttcaatagTTGAAAAGGCCAAGTATTACTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|12690012|gb|BG156348.1|BG156348
EST:     AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTACTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtaccttgtt ... ttttcaatagTTGAAAAGGCCAAGTATTACTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|151394548|gb|EV264419.1|EV264419
EST:     AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTACTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtaccttgtt ... ttttcaatagTTGAAAAGGCCAAGTATTACTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|5606299|gb|AI900405.1|AI900405
EST:     AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATCGGGCATTAG                         CTGCAAAGGCCAAGTATTACTACATTTCTGGCTTTTTNCTCACTGTATCTC
genomic: AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtaccttgtt ... ttttcaatagTTGAAAAGGCCAAGTATTACTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|120531830|gb|EH259963.1|EH259963
EST:     AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTACTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtaccttgtt ... ttttcaatagTTGAAAAGGCCAAGTATTACTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|19936079|gb|BQ080713.1|BQ080713
EST:     AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTAT
genomic: AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtaccttgtt ... ttttcaatagTTGAAAAGGCCAAGTAT
EST: gi|16348521|gb|BI974116.1|BI974116
EST:     AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTACTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: AAATTGCTACAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtaccttgtt ... ttttcaatagTTGAAAAGGCCAAGTATTACTACATTTCTGGCTTTTTCCTCACTGTATCTC