1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTGAAGAAAAACTGGATGGTGGACAAGGGAAAACTTCAGTTAGGCGCTTCTTTTCAAGATTTTGTACACCAATATTTTTGGAGgcaagtacaacttttgcatcatttatttgactgagaaaataaccacatttgtgctacatgtaatatcatcttttcttttttatgcag
species | Glycine max |
transcript | GLYMA09G38640.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTTCAGTTAGGCGCTTCTTTTCAAGATTTTGTACACCAATATTTTTGGAG TCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGEST: gi|18038713|gb|BM307007.1|BM307007
genomic: CTTCAGTTAGGCGCTTCTTTTCAAGATTTTGTACACCAATATTTTTGGAGgcaagtacaa ... ttttatgcagTCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCG
EST: CTTCAGTTAGGCGCTTCTTTTCAAGATTTTGTACACCAATATTTTTGGAG TCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGEST: gi|8402143|gb|BE057777.1|BE057777
genomic: CTTCAGTTAGGCGCTTCTTTTCAAGATTTTGTACACCAATATTTTTGGAGgcaagtacaa ... ttttatgcagTCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCG
EST: CTTCAGTTAGGCGCTTCTTTTCAAGATTTTGTACACCAATATTTTTGGAG TCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCG
genomic: CTTCAGTTAGGCGCTTCTTTTCAAGATTTTGTACACCAATATTTTTGGAGgcaagtacaa ... ttttatgcagTCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAAGAAAAACTGGATGGTGGACAAGGGAAAACTTCAGTTAGGCGCTTCTTTTCAAGATTTTGTACACCAATATTTTTGGAGgcaagtacaacttttgcatcatttatttgactgagaaaataaccacatttgtgctacatgtaatatcatcttttcttttttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG