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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTAATCCCATCACTCAATGAAACTTTTGTTGTTGATCCCACTGTCTCACCATATGAGTCAAGGATCATATTTTTCTATAAAACATGGGATCCTTACGGTgtgttgtcaaattactctcctcatcccattcaaatgcctgatgaaaatggtgattgtgtgacttggatgagtgttgagcattactaccaggtacttgcttttttgcattaattatataattctgtttacgtttgctgttttattgcatagcttatagataaaatttgatgtgtag

Basic information

species Glycine max
transcript GLYMA09G38520.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38520.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G090068_T01 (Zea mays), 5'ss of exon 7
TGTAATCCCATCACTCAATGAAACTTTTGTTGTTGATCCCACTGTCTCACCATATGAGT-CAAGGATCATATTTTTCTATAAAACATGGGATCCTTACGGTgtgttgtcaaattactctcctcatcccattcaaatgcctgatgaaaatggtgattgtgtgacttggatgagtgttgagcattactaccaggtacttgcttttttgcattaattatataattctgtttacgtttgctgttttattgcatagcttatagataaaatttgatgtgtag
  || |       ||   | |||||||| |  |  || | | |      ||  ||||       ||| || |         ||   ||| |  ||         ||  ||  ||  ||| ||  ||  | |   |    |||      | ||   | ||  |  ||  |   |  | |    | | | || ||  |   ||||||    |||  || |||     |  |  |   |||| | || |    ||| |||  ||    ||    |  ||
--TATTTTTGGGGCTTTCTCAAACTTTTCTCCTC-ATTCAATTCAAATGCCTGATGAAAATGGAGATTATTTCACATGGCCAACAGTGGAACACT--------ATTACCAGgtttgtcttctattcgtact---acatgtgaaattccttgttgctatggaaagtgattctataataacg--tgccaacatgtgttccattttttta--taaccatgtaacatcatc-atttggactgtat-atag----gctcataacta----ttttccttcag

upper sequence: GLYMA09G38520.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0023g00680.t01 (Vitis vinifera), 5'ss of exon 7
TGTAATCCCATCACTCAATGAAACTTTTGTTGTTGATCCCACTGTCTCACCATATGAGTCAAGGATCATATTTTTCTATAAAACATGGGATCCTTACGGTgtgttgtcaaattactctcctcatcccattcaaatgcctgatgaaaatggtgattgtgtgacttggatgagtgttgagcattactaccaggtacttgctttt-ttgcattaattatataattctgtttacgtttgctgttttattgcatagcttatagataaaatttgatgtgtag
                                                                                          || ||| || |  || ||||| | ||||||||| || || ||||||||||||||||||||||||| |  ||| |||   || || |||||||| ||||||||   | |||||  ||||| |||||||| |||||   | |   |   |||    |   |       |   |   |   |  || ||
------------------------------------------------------------------------------------------TCTTTATGGAGCTTTTTCAAACTTCTCTCCTCACCCTATACAAATGCCTGATGAAAATGGTGATTATCAGACCTGGTCAAGCGTAGAGCATTATTACCAGgttactacttttgctgcataaattatattattcttgctgcaactttggttaagatatgtca-----aagcattctcccaactgcag