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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGCCCAGAATGTGGAGAGTTCTCACTGCATCACCATGATGGAAGCTATCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAGgtaccactgtttctctgatcttaaatggtgttgtcctttttaggtagagtattgttcatattttatgtagtggatatttgtctgaattagtatatgcaag...

Basic information

species Glycine max
transcript GLYMA09G32850.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G32850.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0044g01740.t01 (Vitis vinifera), 5'ss of exon 4
TCCTGCCCAGAATGTGGAGAGTTCTCACTGCATCACCATGATGGAAGCTATCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAGgtaccactgtttctctgatcttaaatggtgttgtcctttttag--gtagagtattgttcatattttat-gtagtggatatttgtctgaattagtatatgcaag
|||||| |||||||| ||||| || ||||||||||| |||||||||||| | |||||||| |||||||||||| | || || |||||||| ||||||||||||  |   ||      | | |  ||  |||| |  ||  | |  ||||   | |    |     |||   | |  | || ||   | ||  ||  |||||  
TCCTGCTCAGAATGTAGAGAGCTCCCACTGCATCACGATGATGGAAGCTGTGAATGATGGGAAGGACCTTCATATCTCAGTCACCATGCCTTCCATTGAGgtaa-atcattagcaacaccatccattctgttatgtttgcttgtagtagcagactaagaaagaaatattagactaaacatatg---gtatgggtgcatgcag-

upper sequence: GLYMA09G32850.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S61_10V6.1 (Physcomitrella patens), 5'ss of exon 3
TCCTGCCCAGAATGTGGAGAGTTCTCACTGCATCACCATGATGGAAGCTATCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAGgta--ccactgtttct----ctgatcttaaatggtgttgtcctttttaggtaga-gtattgttcatattttatgtagtggatatt---tgtctgaattagtatatgcaag-------------------------------------------
|||||| || ||||| |||||||| || ||||||||||||||||| ||  | ||||||||  | ||| | |||||||| || || ||||| |||||||||||   | ||| | | |    | |  |||     |||  ||  ||   |  |  | ||  ||  ||  | | | ||  | ||   |   |||   | |   | | ||   |                                           
TCCTGCTCAAAATGTTGAGAGTTCACAGTGCATCACCATGATGGAGGCAGTGAATGATGGTCAAGACTTGCATGTTTCTGTCACTATGCCTTCCATTGAGgtgtgcgactttctgtaaagccgtccttttcctgtgcagtttttgagaactgcatgttgtgaacacttctcaggtcctagaccctcattgttcaattgtttgtttgtttgttcatgacaagcttcttacgttccatgttgatgctctttgcag

upper sequence: GLYMA09G32850.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S1_155V6.1 (Physcomitrella patens), 5'ss of exon 3
TCCTGCCCAGAATGTGGAGAGTTCTCACTGCATCACCATGATGGAAGCTATCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAGgtac-cact-gtttctctgatcttaaatggtgttgtcctttt---taggtagagtattgttcatattttatgtagtggatatttgtctgaattagtatatgcaag-------------------------------
|||||| |||||||| ||||| || || ||||||||||||||||| ||| ||||||  ||  | ||| | ||||| || || || ||||| ||||||||||||   ||| | || |   ||    | || | ||      |    || ||  ||| |     |    || |  | |  |||||    ||   |  |  ||||                                  
TCCTGCTCAGAATGTTGAGAGCTCACAATGCATCACCATGATGGAGGCTGTCAATGGAGGTCAAGACTTGCATGTCTCTGTTACGATGCCTTCCATTGAGgtatgtacttgatttttcaattaacagtgcttttagatgctgcaataagtgaagtttgcccgactgattttaaaatctatattacagtgctattatgaatgcttatggatatttccattatttatttgttttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17022704|gb|BM093738.1|BM093738
EST:     TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAG                         GTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
genomic: TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAGgtaccactgt ... aatttctcagGTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
EST: gi|19346557|gb|BM891437.1|BM891437
EST:     TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAG                         GTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
genomic: TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAGgtaccactgt ... aatttctcagGTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
EST: gi|15814590|gb|BI786865.1|BI786865
EST:     TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAG                         GTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
genomic: TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAGgtaccactgt ... aatttctcagGTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
EST: gi|17023303|gb|BM094337.1|BM094337
EST:     TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAG                         GTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
genomic: TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAGgtaccactgt ... aatttctcagGTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
EST: gi|6566625|gb|AW234266.1|AW234266
EST:     TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAG                         GTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
genomic: TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAGgtaccactgt ... aatttctcagGTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
EST: gi|17023963|gb|BM094997.1|BM094997
EST:     TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAG                         GTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
genomic: TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAGgtaccactgt ... aatttctcagGTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
EST: gi|31457643|gb|CD399671.1|CD399671
EST:     TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAG                         GTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
genomic: TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAGgtaccactgt ... aatttctcagGTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
EST: gi|298168676|gb|HO009606.1|HO009606
EST:     TCAATGGTGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAG                         GTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
genomic: TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAGgtaccactgt ... aatttctcagGTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
EST: gi|298174767|gb|HO017876.1|HO017876
EST:     TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAG                         GTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
genomic: TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAGgtaccactgt ... aatttctcagGTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
EST: gi|192318251|gb|FK010991.1|FK010991
EST:     TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAG                         GTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
genomic: TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAGgtaccactgt ... aatttctcagGTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
EST: gi|9819774|gb|BE555287.1|BE555287
EST:     TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAG                         GTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
genomic: TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAGgtaccactgt ... aatttctcagGTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
EST: gi|18692885|gb|BM521733.1|BM521733
EST:     TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAG                         GTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
genomic: TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAGgtaccactgt ... aatttctcagGTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
EST: gi|5057595|gb|AI736071.1|AI736071
EST:     TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAG                         GTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
genomic: TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAGgtaccactgt ... aatttctcagGTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
EST: gi|16347226|gb|BI972821.1|BI972821
EST:     TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAG                         GTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
genomic: TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAGgtaccactgt ... aatttctcagGTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
EST: gi|151397901|gb|EV267774.1|EV267774
EST:     TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAG                         GTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT
genomic: TCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAGgtaccactgt ... aatttctcagGTTGGTACTGTTGGAGGTGGCACACAACTCGCATCTCAGTCAGCATGTCTT