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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAGGGCTCATTAAACTGTCATCATATTCCAGCTTTAGTCTATTTGAATGTCGTAAAGTTGTTACTGGCTCCAAAGCACCTGATCTTGGGAATGGCATgtcttttttcctctccttgtttttgttatattataatcaaagctgaagttaatagtcttacag

Basic information

species Glycine max
transcript GLYMA09G32740.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G32740.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G65930.1 (Arabidopsis thaliana), 5'ss of exon 4
-TTGCAGGGCTCATTAAACTGTCATCATATTCCAGCTTTAGTCTATTTGAATGTCGTAAAGTTGTTACTGGCTCCAAAGCACCTGATCTTGGGAATGGCATgtcttttttcctct--ccttgtttt-tgttatattataat-caaagctgaagttaatagtcttacag------------
 | || ||    |||||||| ||| | |  || ||||||||| | ||||||||||||||||||||| |  | || ||| || ||||||  || ||||| |||  ||  |    ||  | | ||  | | || |    |||| |||   |   | | ||  |  ||               
CTAGCTGGAACAATTAAACTATCAGCTTTCTCTAGCTTTAGTTTGTTTGAATGTCGTAAAGTTGTTTCAAGTTCTAAATCATCTGATCCCGGAAATGgtatgctttcatatgactggcttcgtcatatattgtgaagtaatacaacattatcgatcatttttctatctgtgcacttgcag

upper sequence: GLYMA09G32740.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G65930.3 (Arabidopsis thaliana), 5'ss of exon 4
----TTGCAGGGCTCATTAAACTGTCATCATATTCCAGCTTTAGTCTATTTGAATGTCGTAAAGTTGTTACTGGCTCCAAAGCACCTGATCTTGGGAATGGCATgtcttttttcctct--ccttgtttt-tgttatattataat-caaagctgaagttaatagtcttacag------------
    | || ||    |||||||| ||| | |  || ||||||||| | ||||||||||||||||||||| |  | || ||| || ||||||  || ||||| |||  ||  |    ||  | | ||  | | || |    |||| |||   |   | | ||  |  ||               
GAGCTAGCTGGAACAATTAAACTATCAGCTTTCTCTAGCTTTAGTTTGTTTGAATGTCGTAAAGTTGTTTCAAGTTCTAAATCATCTGATCCCGGAAATGgtatgctttcatatgactggcttcgtcatatattgtgaagtaatacaacattatcgatcatttttctatctgtgcacttgcag