Sequence
atgc intronic sequence ATGC exonic sequenceGGAGGGGATTGCTTATAAGGTACTTCAGTGGTATTTATGTAGACTGGAGGGCTGGTTTGCTGCAGACACTGATGCTATTTCACTGAAAGGATGGGACCAGgtaatttcaacaaatgaagtcgaaaatctttttggttgtattagtggttgagttccaaatcaacaattcccccacccttccaatcacccctattttataa...
Basic information
species | Glycine max |
transcript | GLYMA08G41570.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G41570.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0028g01120.t01 (Vitis vinifera), 5'ss of exon 7
GGAGGGGATTGCTTATAAGGTACTTCAGTGGTATTTATGTAGACTGGAGGGCTGGTTTGCTGCAGACACTGATGCTATTTCACTGAAAGGATGGGACCAGgtaatt-tcaacaaatgaagtcgaaaatctttttggttgtattagtggttgagttc-caaatcaacaattcccccacccttccaatcacccctattttataa
||||||| | ||| |||||||||| || ||||| || || ||| |||| ||||||||||||||||| ||||| || ||||| ||| | ||||| |||||| | | |||| ||| | |||| || | || | | | | |||| ||| | | | | | || |
GGAGGGGCTGGCTCATAAGGTACTGCAATGGTACTTGTGCAGAATGGAAGGCTGGTTTGCTGCAGATGCTGATAACATATCACTTAAAAGTTGGGATCAGgtatcaattcataaat--agttctagatctcttagccaatagaaatagaaaaaagagttgttcaagaatcaatgtgcgtgtatgctaaacatgataaggaga
upper sequence: GLYMA08G41570.3 (Glycine max), 5'ss of exon 7
lower sequence: EFJ33019 (Selaginella moellendorffii), 5'ss of exon 9
GGAGGGGATTGCTTATAAGGTACTTCAGTGGTATTTATGTAGACTGGAGGGCTGGTTTGCTGCAGACACTGATGCTATTTCACTGAAAGGATGGGACCAGgtaatttcaacaaatgaagtcgaaaatctttttggttgtattagtggttgagttccaaatcaacaattcccccacccttccaatcacccctattttataa
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AGAAGGCCTGGGACACCGAGTTTTACAGTGGTACTTATGTAGACTGGAAGGATGGTTTGCTGCTGACGCAGATAAAATCTCCCTCCAGAACTGGGATGAGgtga--------gacatgaccaattctcttccccgtgactcagatcctttcgtgtgcag-----------------------------------------
upper sequence: GLYMA08G41570.3 (Glycine max), 5'ss of exon 7
lower sequence: EFJ30336 (Selaginella moellendorffii), 5'ss of exon 6
GGAGGGGATTGCTTATAAGGTACTTCAGTGGTATTTATGTAGACTGGAGGGCTGGTTTGCTGCAGACACTGATGCTATTTCACTGAAAGGATGGGACCAGgtaatttcaacaaatgaagtcgaaaatctttttggttgtattagtggttgagttccaaatcaacaattcccccacccttccaatcacccctattttataa
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AGAAGGCCTGGGACACCGAGTTTTACAGTGGTACTTATGTAGACTGGAAGGATGGTTTGCTGCTGACGCAGATAAAATCTCCCTCCAGAGCTGGGATGAGgtga--------gacatgaccaattctcttccccgtgactcagatcctttcgtgtgcag-----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7673728|gb|AW160135.1|AW160135EST: GCTGGTTTGCTGCAGACACTGATGCTATTTCACTGAAAGGATGGGACCAG GAGGTACTGCTCCCTGGTGGTCATGGTCTTATGGTCCGTGGCTACTTGCCT
genomic: GCTGGTTTGCTGCAGACACTGATGCTATTTCACTGAAAGGATGGGACCAGgtaatttcaa ... gtatttacagGAGGTACTGCTCCCTGGTGGTCATGGTCTTATGGTCCGTGGCTACTTGCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGGGGATTGCTTATAAGGTACTTCAGTGGTATTTATGTAGACTGGAGGGCTGGTTTGCTGCAGACACTGATGCTATTTCACTGAAAGGATGGGACCAGgtaatttcaacaaatgaagtcgaaaatctttttggttgtattagtggttgagttccaaatcaacaattcccccacccttccaatcacccctattttataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG