Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGACCAGAAACAGATCAGGCAACTGTTTCCAGGATAAGGGATGCTATCAGAGAACAAAGGGAAATCACTGTACAGTTGATAAACTATACTAAGAGTGgtaaataactggtcaaattataactatacttctaactgtctctctcttttcgttggaggatgacttgtccttcctcctagaagttgtatttctctttatt...

Basic information

species Glycine max
transcript GLYMA08G33560.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G33560.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 7
CAAGGACCAGAAACAGATCAGGCAACTGTTTCCAGGATAAGGGATGCTATCAGAGAACAAAGGGAAATCACTGTACAGTTGATAAACTATACTAAGAGTGgta-------aataactggtc---aaattataactat-acttctaactgtctctctcttttcgttggaggatgacttgtccttcctcctaga-agttg-tatttctctttatt---------------------------
|| ||||| ||||| ||||| | ||| || || | |||||| |||||||||||| ||||||||||||||||||| |||||||| ||||| || ||||| ||||       |||||   ||    |  ||  |   || || | | ||| ||||||||| |   |       |  ||     || | || | | | ||| |||  |    |  |                           
CAGGGACCTGAAACTGATCAAGGAACCGTCTCAAAGATAAGAGATGCTATCAGACAACAAAGGGAAATCACTGTTCAGTTGATCAACTACACAAAGAGCGgtatggtgctaataatctgttcttagcttggagacatcacgttttactctctctctctctctctctctctctctctctctttttccccaaaacaattgctataccaaaatgattgattgcatggattacatgccttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31306491|gb|CD391694.1|CD391694
EST:     CAGAGAACAAAGGGAAATCACTGTACAGTTGATAAACTATACTAAGAGTG                         GGAAAAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAG
genomic: CAGAGAACAAAGGGAAATCACTGTACAGTTGATAAACTATACTAAGAGTGgtaaataact ... taatatgtagGGAAAAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAG