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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGAAATGATGGATCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACGAGTTTACTGgtgagttctatcatagtaaaaaaccgtatatggaaataatactatcattactttatcatgtttacctacctgtgtagtttatatatttcctttgattctgaaagcttaatgatttctatctttgcatttacag

Basic information

species Glycine max
transcript GLYMA08G09370.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G09370.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 8
GCAAGAAATGATGGATCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACGAGTTTACTGgtgagttctatcatagtaaaaaaccgtatatggaaataatactatcattactttatcatgtttacc--tacctgtgt--agtttatatatttcctttgattctgaaagcttaatgatttct-atctttgcatttacag-------------------------------------
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GCAGGAATTAATGGACTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTTTGAGGCTTTTACAGgtatgcttcttaataatagggaaa-gcagatgcacccaagact-tcataaatg-accaagtcaaaaaataactatcctcaatgtttatcacttgttcagtattttatgatcgacaatgtctgattcttcgatattctgaaaaaacctagatattgacgcggttgattctttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13479054|gb|BG508397.1|BG508397
EST:     TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACGAGTTTACTG                         GAACTGATGGCCCTCTAGGAAAGAGATTAAACAACACAAAAACCTGCCAGG
genomic: TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACGAGTTTACTGgtgagttcta ... gcatttacagGAACTGATGGCCCTCTAGGAAAGAGATTAAACAACACAAAAACCTGCCAGG
EST: gi|13478849|gb|BG508192.1|BG508192
EST:     TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACGAGTTTACTG                         GAACTGATGGCCCTCTAGGAAAGAGATTAAACAACACAAAAACCTGCCAGG
genomic: TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACGAGTTTACTGgtgagttcta ... gcatttacagGAACTGATGGCCCTCTAGGAAAGAGATTAAACAACACAAAAACCTGCCAGG
EST: gi|22928805|gb|BU545944.1|BU545944
EST:     TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACGAGTTTACTG                         GAACTGATGGCCCTCTAGGAAAGAGATTAAACAACACAAAAACCTGCCAGG
genomic: TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACGAGTTTACTGgtgagttcta ... gcatttacagGAACTGATGGCCCTCTAGGAAAGAGATTAAACAACACAAAAACCTGCCAGG
EST: gi|15204256|gb|BI427024.1|BI427024
EST:     TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACGAGTTTACTG                         GAACTGATGGCCCTCTAGGAAAGAGATTAAACAACACAAAAACCTGCCAGG
genomic: TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACGAGTTTACTGgtgagttcta ... gcatttacagGAACTGATGGCCCTCTAGGAAAGAGATTAAACAACACAAAAACCTGCCAGG
EST: gi|19347419|gb|BM892299.1|BM892299
EST:     CGAGTTTACTG                         GAACTGATGGCCCTCTAGGAAAGAGATTAAACAACACAAAAACCTGCCAGG
genomic: CGAGTTTACTGgtgagttcta ... gcatttacagGAACTGATGGCCCTCTAGGAAAGAGATTAAACAACACAAAAACCTGCCAGG
EST: gi|214005358|gb|DB988906.1|DB988906
EST:     TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACGAGTTTACTG                         GAACTGATGGCCCTCTAGGAAAGAGATTAAACAACACAAAAACCTGCCAGG
genomic: TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACGAGTTTACTGgtgagttcta ... gcatttacagGAACTGATGGCCCTCTAGGAAAGAGATTAAACAACACAAAAACCTGCCAGG