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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCTATAGCTTCAACAAATGCAATTATATCAGCAGCATGTGCACTAGAAACATTAAAGATTGCAACAGAGTGCAGCAAAACTTTGTCGAACTATTTAACgtatggcctttatcttattattatttgccttttggtataaatattattgattggttaatacctgtag

Basic information

species Glycine max
transcript GLYMA07G38770.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38770.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0020g02820.t01 (Vitis vinifera), 5'ss of exon 7
CAGCTATAGCTTCAACAAATGCAATTATATCAGCAGCATGTGCACTAGAAACATTAAAGATTGCAACAGAGTGCAGCAAAACTTTGTCGAACTATTTAACgtatggc---ctttatctt---------attattatttgcctttt---ggtataaatattattgattggttaatacctgtag------------------
| || || || || |||||||||||||| ||||| ||||||||||| ||||| || ||||||| | |||  |||||||||||||| || |||||| ||||||  | |   |||  ||||         |||| ||||   |||      || |     || ||   ||| | ||     |||                  
CGGCCATTGCATCCACAAATGCAATTATTTCAGCTGCATGTGCACTGGAAACCTTGAAGATTGTATCAGGATGCAGCAAAACTTTATCAAACTATCTAACgtgcgccatacttcctcttcaatttttaattaatattcaacttcacaaagtcttgtccttgttatatggatcattttattagaactaaatgataggttaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254324592|gb|GR834017.1|GR834017
EST:     CAATTAAAGA-TGCAACAGAGTGCAGCAAAACTTTGTCGAACTATTTAAC                         GTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGA
genomic: C-ATTAAAGATTGCAACAGAGTGCAGCAAAACTTTGTCGAACTATTTAACgtatggcctt ... atacctgtagGTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGA
EST: gi|193546623|gb|FK500980.1|FK500980
EST:     CAATTAAAGA-TGCAACAGAGTGCAGCAAAACTTTGTCGAACTATTTAAC                         GTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGA
genomic: C-ATTAAAGATTGCAACAGAGTGCAGCAAAACTTTGTCGAACTATTTAACgtatggcctt ... atacctgtagGTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGA
EST: gi|51335050|gb|CO978916.1|CO978916
EST:     ACATTAAAGATTGCAACAGAGTGCAGCAAAACTTTGTCGAACTATTTAAC                         GTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGA
genomic: ACATTAAAGATTGCAACAGAGTGCAGCAAAACTTTGTCGAACTATTTAACgtatggcctt ... atacctgtagGTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGA
EST: gi|37995116|gb|CF806705.1|CF806705
EST:     GAACTATTTAAC                         GTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGA
genomic: GAACTATTTAACgtatggcctt ... atacctgtagGTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGA
EST: gi|254322097|gb|GR837511.1|GR837511
EST:     ACATTAAAGATTGCAACAGAGTGCAGCAAAACTTTGTCGAACTATTTAAC                         GTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGA
genomic: ACATTAAAGATTGCAACAGAGTGCAGCAAAACTTTGTCGAACTATTTAACgtatggcctt ... atacctgtagGTATAATGGATCAGAAGGCCTCCATACTGAAGTTGCAGAATTTGAAAGGGA