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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGCAGGGAAAAATATTTTGAACAATACGGAGAATATAAGATCCATAAGATTTGGCGGGATGATGTTTTCCCATGCCGTGTTTATCTTCGTCACTGgtaagtagcctgtcatattaattaattaataacactaaagtcattgcttatgaggtcttatgttttatttatttatggattcgaaatacttaaatgaaag...

Basic information

species Glycine max
transcript GLYMA07G37370.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G37370.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0077g01810.t01 (Vitis vinifera), 5'ss of exon 7
AGGGCAGGGAAAAATATTTTGAACAATACGGAGAATATAAGATCCATAAGATTTGGCGGGATGATGTTTTCCCATGCCGTGTTTATCTTCGTCACTGgtaagtagc--ctgtcat---attaattaattaataacactaaagtcattgcttatgaggtcttatgttttatttatttatggattcgaaatacttaaatgaaag--
 | ||| ||| |  | |||||| ||||| ||   |||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||||||| ||||||| |||      | || |   ||   ||  |||   |   | |    |||||||   ||    |  |  | |||||   |||   | |||  ||     || ||   
GGAGCAAGGAGATGTTTTTTGAGCAATATGGGCGATATAACATCCACAAGATTTGGCGAGATGATGTCTTCCCTTGCCGTGTTTATCTTCGGCACTGgttagtgttaattatccttgaatgttttgcttacacatgttcatagtattgcttg-aagaatctgggaatgatttacaaatg---ttgaaccac---ggtgcaatat

upper sequence: GLYMA07G37370.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0077g01800.t01 (Vitis vinifera), 5'ss of exon 7
AGGGCAGGGAAAAATATTTTGAACAATACGGAGAATATAAGATCCATAAGATTTGGCGGGATGATGTTTTCCCATGCCGTGTTTATCTTCGTCACTGgtaagta--gcctgtcatattaattaattaataacactaaagtcattgcttatgaggtcttatgttttatttatttatggattcgaaatacttaaatgaaag
   | | ||| | ||||||| | ||||| ||     |||| ||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||| |||   |  | || | |  ||  |||  | |||   |  | ||||| |  | | | |     ||  ||         |      | | ||   | | | 
GAAGTAAGGAGATATATTTTCAGCAATATGGCCGCCATAACATCCATAAGATTTGGCGAGATGATGTTTTACCTTGCCGTGTTTATCTTCGACACTGgtcagtgttgattatcttttatatatattttttacat--attttattgcctgagggatatgggaattgtttccaactcacaagaaccacattttcttcacac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254333784|gb|GR848702.1|GR848702
EST:     AAGATTTGGCGGGATGATGTTTTCCCATGCCGTGTTTATCTTCGTCACTG                         TGTCCTGGCTGCAAAAAGCCTTGGCGATGAAGTCCACAATAACTTTTTGGA
genomic: AAGATTTGGCGGGATGATGTTTTCCCATGCCGTGTTTATCTTCGTCACTGgtaagtagcc ... attgttgcagTGTCCTGGCTGCAAAAAGCCTTGGCGATGAAGTCCACAATAACTTTTTGGA
EST: gi|7691086|gb|AW759220.1|AW759220
EST:     AAGATTTGGCGGGATGATGTTTTCCCATGCCATGTTTATCTTCGTCACTG                         TGTCCTGGCTTGCAAAA-GCCTTGGCGATGAAGTACACAAT
genomic: AAGATTTGGCGGGATGATGTTTTCCCATGCCGTGTTTATCTTCGTCACTGgtaagtagcc ... attgttgcagTGTCCTGGCT-GCAAAAAGCCTTGGCGATGAAGTCCACAAT
EST: gi|209728568|gb|BW663568.1|BW663568
EST:     AAGATTTGGCGGGATGATGTTTTCCCATGCCGTGTTTATCTTCGTCACTG                         TGTCCTGGCTGCAAAA-GCCTTGGCGAT
genomic: AAGATTTGGCGGGATGATGTTTTCCCATGCCGTGTTTATCTTCGTCACTGgtaagtagcc ... attgttgcagTGTCCTGGCTGCAAAAAGCCTTGGCGAT
EST: gi|254333783|gb|GR848701.1|GR848701
EST:     AAGATTTGGCGGGATGATGTTTTCCCATGCCGTGTTTATCTTCGTCACTG                         TGTCCTGGCTGCAAAAAGCCTTGGCGATGAAGTCCACAATAACTTTTTGGA
genomic: AAGATTTGGCGGGATGATGTTTTCCCATGCCGTGTTTATCTTCGTCACTGgtaagtagcc ... attgttgcagTGTCCTGGCTGCAAAAAGCCTTGGCGATGAAGTCCACAATAACTTTTTGGA
EST: gi|192300324|gb|FG988801.1|FG988801
EST:     AAGATTTGGCGGGATGATGTTTTCCCATGCCGTGTTTATCTTCGTCACTG                         TGTCCTG-CTGCAAAA-GCCTTGGCGATGAAGTCCACAATAACTTTTTGGA
genomic: AAGATTTGGCGGGATGATGTTTTCCCATGCCGTGTTTATCTTCGTCACTGgtaagtagcc ... attgttgcagTGTCCTGGCTGCAAAAAGCCTTGGCGATGAAGTCCACAATAACTTTTTGGA
EST: gi|192323856|gb|FK015637.1|FK015637
EST:     AAGATTTGGCGGGATGATGTTTTCCCATGCCGTGTTTATCTTCGTCACTG                         TGCCCTGGCTGCAAAAAGCCTTGGCGATGAAGTCCACAATAACTTTTTGGA
genomic: AAGATTTGGCGGGATGATGTTTTCCCATGCCGTGTTTATCTTCGTCACTGgtaagtagcc ... attgttgcagTGTCCTGGCTGCAAAAAGCCTTGGCGATGAAGTCCACAATAACTTTTTGGA
EST: gi|4298808|gb|AI442814.1|AI442814
EST:     AAGATTTGGCGGGATGATGTTTTCCCATGCCGTGTTTATCTTCGTCACTG                         TGTCCTGGCTGCAAAAAGCCTTGGCGATGAAGTCCACAATAACTTTTTGGA
genomic: AAGATTTGGCGGGATGATGTTTTCCCATGCCGTGTTTATCTTCGTCACTGgtaagtagcc ... attgttgcagTGTCCTGGCTGCAAAAAGCCTTGGCGATGAAGTCCACAATAACTTTTTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGGCAGGGAAAAATATTTTGAACAATACGGAGAATATAAGATCCATAAGATTTGGCGGGATGATGTTTTCCCATGCCGTGTTTATCTTCGTCACTGgtaagtagcctgtcatattaattaattaataacactaaagtcattgcttatgaggtcttatgttttatttatttatggattcgaaatacttaaatgaaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaaa