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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGTTGCTCTTAGATGTGTCGACCCGGATGCAGCAAAGAGGCCTAAAATAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtgttcttttcccttctcaaactttacattttagttgactgaaccaataataagaaatttcaattttgctgtaatctgatgcttctggcttttgttttgtccttcctgtctgtag

Basic information

species Glycine max
transcript GLYMA07G07250.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G07250.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g03410.1 (Oryza sativa), 5'ss of exon 6
GTTGGTTGCTCTTAGATGTGTCGACCCGGATGCAGCAAAGAGGCCTAAAATAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtgttcttttcccttctcaaactttacattttagttgactgaaccaataataagaaatttcaattttgctgtaatctgatgcttctggcttttgttttgtccttcctgtctgtag
  |||| || ||| | || ||||| || ||||     |||||||||||||| |||||||| || |||||||||||    || || ||  ||| ||| ||||| ||||||  || ||| |  ||||||    |||  |  | | |   || | ||      || | |  |  | | ||    |||   ||    |  |   |                
TCTGGTCGCCCTTCGCTGCGTCGATCCTGATGGCCACAAGAGGCCTAAAATGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttctactcacttat-gaactttttgatttcttccatttactaaacagtatag---ttaactcattttctgat----tgcaattgttcatcatacag----------------

upper sequence: GLYMA07G07250.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G176604_T01 (Zea mays), 5'ss of exon 3
GTTGGTTGCTCTTAGATGTGTCGACCCGGATGCAGCAAAGAGGCCTAAAATAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtgtt-----cttttcccttc--tcaaactttacattttagttgactgaaccaataataagaaatttcaattttgctgtaatctgatgcttctggcttttgttttgtccttcctgtctgtag
  |||| || ||| | ||||||||||| |||||    |||||||||||||| || |||||||| ||||||||||||   || || ||| | ||||| ||||| |||      | ||  || ||  |       | | || |    | || | | |   |   | | |  ||||     ||    |  ||  |  ||   | || |  |                
CCTGGTCGCGCTTCGCTGTGTCGACCCTGATGCGAACAAGAGGCCTAAAATGGGGCATGTGATTCACATGCTCGAGATGGACGATCTCCTCTTCCGAGATgtatgtcagaaccattaaccatcatttgtttcctcccttctctcagtctcatctaccgagccgtagtaacaatcacattg----ccaattatgttgatatatggtcag----------------

upper sequence: GLYMA07G07250.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 6
GTTGGTTGCTCTTAGATGTGTCGACCCGGATGCAGCAAAGAGGCCTAAAATAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtg----------ttcttttcccttctcaaactttacattttagttgactgaaccaataataagaaatttcaattttgctgtaatctgatgcttctggcttttgtttt-gtccttcctgtctgtag--------------
 || ||||||||  | ||||| || || |||||| |||||||||| ||||| |||||||| ||||||||||| ||||| || |||||  ||||||| |||||  |          ||| ||   |||||  || | || |  |||| |     ||   ||   || ||||  ||| |      | ||       || | ||||   |||    ||    ||| ||| |              
TTTAGTTGCTCTCCGGTGTGTTGATCCTGATGCAACAAAGAGGCCCAAAATGGGACATGTAATCCACATGCTTGAGGCCGATGACCTACTATTCCGAGATgtacgcatcatttgtttcattcatcttcttcaattataaaagttagatagtccaa--gatgtcaaaaaatgacaaatgatagttgatgaatcaattattgcttgaatttccaacccatttgtttgttgtcattattttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16348962|gb|BI974557.1|BI974557
EST:     TAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGAT                         GATCGAAGGACTGGAGGAGAATCCTCCCGTTCCCATCGCGATTATCAACTA
genomic: TAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtgttctt ... ctgtctgtagGATCGAAGGACTGGAGGAGAATCCTCCCGTTCCCATCGCGATTATCAACTA
EST: gi|151404308|gb|EV274118.1|EV274118
EST:     TAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGAT                         GATCGAAGGACTGGAGGAGAATCCTCCCGTTCCCATCGCGATTATCAACTA
genomic: TAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtgttctt ... ctgtctgtagGATCGAAGGACTGGAGGAGAATCCTCCCGTTCCCATCGCGATTATCAACTA
EST: gi|37994187|gb|CF805933.1|CF805933
EST:     TAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGAT                         GATCGAAGGACTGGAGGAGAATCCTCCCGTTCCCATCGCGATTATCAACTA
genomic: TAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtgttctt ... ctgtctgtagGATCGAAGGACTGGAGGAGAATCCTCCCGTTCCCATCGCGATTATCAACTA
EST: gi|51335712|gb|CO979578.1|CO979578
EST:     TAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGAT                         GATCGAAGGACTGGAGGAGAATCCTCCCGTTCCCATCGCGATTATCAACTA
genomic: TAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtgttctt ... ctgtctgtagGATCGAAGGACTGGAGGAGAATCCTCCCGTTCCCATCGCGATTATCAACTA