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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGATGAGATTGTTTAGTCCACGAAAAACAACATTGTTGTTTGTCATACGCGATAAAACAAGGgtgtgtaatagctgcttatttattttttttgtaattatttgtttgttatatatttttaattctaaatacttttgtttgttgttgatgtggctaacctttcccttttatag

Basic information

species Glycine max
transcript GLYMA07G01230.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01230.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g39310.3 (Oryza sativa), 5'ss of exon 7
GTCATGATGAGATTGTTTAGTCCACGAAAAACAACATTGTTGTTTGTCATACGCGATAAAACAAGGgtgtgtaatagctg---------cttatttattttttttgtaattatttgtttgttata-tatttttaattctaaatacttttgtttgttgttgatgtggc---taacctttcccttttatag---
|| |||||||||||||| |||||||| ||||| |||||||||||||| || || |||||| ||| |||| |   | |||           |    | ||  |||  | |  |  |    |   |  || | | || || |||| |   | | |||  |  |  |  |   |  || || |  |||| |    
GTTATGATGAGATTGTTCAGTCCACGTAAAACGACATTGTTGTTTGTTATTCGTGATAAATCAAAGgtgagggcttgctagggtgcaatttaggctgttagtttcctgagaaactaccagcagtcctactatgaactccaaatccaaatctatgtactgcaactaacatgtgcccatttcggtttacaacag

upper sequence: GLYMA07G01230.1 (Glycine max), 5'ss of exon 7
lower sequence: AC196426.3_FGT007 (Zea mays), 5'ss of exon 6
GTCATGATGAGATTGTTTAGTCCACGAAAAACAACATTGTTGTTTGTCATACGCGATAAAACAAGGgtgtgtaatagctgcttatttattttttttgtaattatttgtttgttatatatttttaattctaaatacttttgtttgttgttgatgtggctaacctttcccttttatag
||||||||||| ||||| ||||| || |||||||||||||||||||| ||||| || ||| |||||||  |        ||||  || ||   | || ||  || |  ||        |||| |  | | | |  | |||| |  |    || |||||    ||    | ||  ||
GTCATGATGAGGTTGTTCAGTCCTCGCAAAACAACATTGTTGTTTGTTATACGTGACAAATCAAGGgtaagg-------gcttgcttgttacatgtg-aacaatctactttcc-----ttttcacatttgatt--tcttgtatactaactat-tggctccttttggtttcttgcag

upper sequence: GLYMA07G01230.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G72960.1 (Arabidopsis thaliana), 5'ss of exon 7
GTCATGATGAGATTGTTTAGTCCACGAAAAACAACATTGTTGTTTGTCATACGCGATAAAACAAGGgtgtgtaatagctgcttatttattttttttgtaattatttgtttgttatatatttttaattctaaatacttttgtttgttgttgatgtggctaacctttcccttttatag
|| |||||| |||||||||||||||| ||||||||| || ||||||| ||||| ||||||||  ||||     | |    ||| ||| || ||| | | ||| ||  |   ||  | |||| |||     ||    |   |   ||||   | | | | |  ||  |    |  ||
GTGATGATGCGATTGTTTAGTCCACGTAAAACAACAATGCTGTTTGTAATACGAGATAAAACCCGGgt-----acactctcttcttttttctttgtatcattcttcttacattgcagatttgtaacagctaactggtacatacattgtc--tattgatgattttggc----tgcag

upper sequence: GLYMA07G01230.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g02200.t01 (Vitis vinifera), 5'ss of exon 7
GTCATGATGAGATTGTTTAGTCCACGAAAAACAACATTGTTGTTTGTCATACGCGATAAAACAAGGgtgtgtaatagctgcttatttattttttttgtaattatttgtttgttatatatt--tttaattctaaatacttttgttt------gttgttgatgtg-gctaacctttcccttttatag--------------
|| |||||| ||||||||||||||||||||||||| ||| ||||||| || || ||||||||||||||||||  |  ||  |      | |||  ||| ||  |  |   | ||  || |  |||| || ||  |   |||||||      | | || | ||| ||| | ||||   |  |                  
GTTATGATGCGATTGTTTAGTCCACGAAAAACAACTTTGATGTTTGTTATTCGTGATAAAACAAGGgtgtgttttctctcttgtgccttatttgatgttatagtgcgagggatagctagtattttagttgtatgtttgtttgtttaagtgagatattaaggtgagctgaactttaagtgctgattttttttgtatacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209704689|gb|BW656667.1|BW656667
EST:     TTAGTCCACGAAAAACAACATTGTTGTTTGTCATACGCGATAAAACAAGG                         ACACCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAG
genomic: TTAGTCCACGAAAAACAACATTGTTGTTTGTCATACGCGATAAAACAAGGgtgtgtaata ... ccttttatagACACCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAG