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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAGCCGAAATATCCTCCATTTCCTTTAAATACTATTGAGCTTCAAAAACGTGCTTCAAGATACTTCCGGATGAGTTCTGATCACACAATGAAGgtgagttaatattagattctgatgtttcagagaatatgtaaagggtaatgaatgattttatcacttactgaaatactcaatattgcacatatttatagat...

Basic information

species Glycine max
transcript GLYMA06G16200.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16200.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g06900.1 (Oryza sativa), 5'ss of exon 7
----GAGAAGCCGAAATATCCTCCATTTCCTTTAAATACTATTGAGCTTCAAAAACGTGCTTCAAGATACTTCCGGATGAGTTCTGATCACACAATGAAGgtg--agttaatattagattctgatgtttcagagaatatgtaaagggt--aatgaatgatt-ttatcacttactgaaatactcaatattgcacatatttatagat-----------------
    ||||| |  ||||| || |||| |||  ||| ||| || |||||||| |||||||| || || |||||| | |||||||| || |||||||||||||||  |   |  |||  ||| || |      |   |  |  ||  | |    |     ||| |   ||| ||       ||| | | ||   |  | |  |   |                 
TCAAGAGAAACTAAAATACCCCCCATATCCACTAAGTACCATAGAGCTTCAGAAACGTGCCTCTAGGTACTTCAGAATGAGTTCCGAGCACACAATGAAGgtgttaaaaataattctattttggtaaccttgtatacctagaacagttttgctagccaattatggccacatatcactgaactgattgttttgctgagtgctctcttgtcctgtctatatcag

upper sequence: GLYMA06G16200.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G470438_T02 (Zea mays), 5'ss of exon 7
----GAGAAGCCGAAATATCCTCCATTTCCTTTAAATACTATTGAGCTTCAAAAACGTGCTTCAAGATACTTCCGGATGAGTTCTGATCACACAATGAAGgtgagttaatattagattctgatgtttcagagaatatgtaaagggtaatgaatgattttatcacttactgaaata-ctcaatattgcacatatttatagat---------------------------
    |||||||  ||||| || |||| |||  ||| |||  | |||||||| ||||||||||| || |||||  | |||||||| || ||||||||||||||     |||||    |  |   |||| |       |   |     | |   | ||  |   || |||   | || ||   |  |   | | ||| |   |                           
TCAAGAGAAGCTAAAATACCCCCCATATCCACTAAGTACAGTGGAGCTTCAGAAACGTGCTTCTAGGTACTTTAGAATGAGTTCAGAGCACACAATGAAGgtctaagaatatcttgtcttatagttttaatttcccttccagttccactatctaataatgg-acatacctcagtagcttcgttgtttgcttgttttttctttggtggtctcttccctttcaacaccag

upper sequence: GLYMA06G16200.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G63920.1 (Arabidopsis thaliana), 5'ss of exon 7
----GAGAAGCCGAAATATCCTCCATTTCCTTTAAATACTATTGAGCTTCAAAAACGTGCTTCAAGATACTTCCGGATGAGTTCTGATCACACAATGAAGgt--gagttaatatt-agattc----------------tgatgtttcag------agaat---atgtaaagggtaat--gaatgattttatcacttactgaaatact-caatattgcacatatttatagat---------------------------------------------------------
    ||       || |||||||| | |||||| || || ||||| ||| ||||||||||||||||||| |||||  ||||||| || ||||| ||||||||  || | | |||| |||||                 ||||  ||  |      || ||   ||||  |   ||||   |||  | || || |||  |  | |  |    | | | | |   | |||  |                                                         
AAGGGAACGATTCAAGTATCCTCCTTATCCTTTGAACACGATTGAACTTGAAAAACGTGCTTCAAGATATTTCCGTCTGAGTTCAGAGCACACCATGAAGgtctgaatgagtatttagattggttaagatactttctatgattctttggcctattaggattgcatgttcaacataatctaaattctgttctctcttggtagagttttatgctgtcgtataggctgatatgtctttgaattacaattacatctctcttttgttaaatgacatcaaaaatgtctggacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193654728|gb|FK599200.1|FK599200
EST:     CTGATCACACAATGAAG                         GTAGCAGAAGAACTTTACCAAGCTGGTTTTATCAGTTATCCTCGTACAGAA
genomic: CTGATCACACAATGAAGgtgagttaat ... ttatttatagGTAGCAGAAGAACTTTACCAAGCTGGTTTTATCAGTTATCCTCGTACAGAA