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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATAGTTCTATTTCATTATGATGGCAAAACAACTGAATGGGGTGAGTTTGAGTGGTCAAAGCGGGCAATTCATGTGAGTGTCCGCAAACAGACCAAATGgtaagaatccattgcgctcgatcgtaaatattggatgacaaattttccttgcaacttttaccattattattgtttgcctaactaaaatcaaaagtgttctgcttattcatctatgttatgatattaagcatttaattattttccctcctag

Basic information

species Glycine max
transcript GLYMA05G30830.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30830.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0187g00030.t01 (Vitis vinifera), 5'ss of exon 3
CAATAGTTCTATTTCATTATGATGGCAAAACAACTGAATGGGGTGAGTTTGAGTGGTCAAAGCGGGCAATTCATGTGAGTGTCCGCAAACAGACCAAATGgtaagaatccattgcgctcgatcgtaaat--attggatgacaaattttccttgcaacttttaccattattattgtttgcctaactaaaatcaaaagtgttctgcttattcatctatgttatgatattaagcatttaattattttccctcctag
| ||  |||||||||||||||||||  ||||||||||||||| ||| ||||||||||||||| |||| ||||||||||| || || | ||| || |||||||||| | |   |||    |||  |   |  |  | |     | |||| || | |  ||| |  |    ||| || ||  | | |    |   || |    |  ||     | | |  ||                                 
CCATCCTTCTATTTCATTATGATGGTCAAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTCGGAGACAAACAAAATGgtaaggagcttctgcaaaggattatttttgaacagaagtttcactttttctggtaggtttcaataa-gctatggtctgttttattc---ttttaacttcattctttgcaattttgtcctag--------------------------------

upper sequence: GLYMA05G30830.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 7
CAATAGTTCTATTTCATTATGATGGCAAAACAACTGAATGGGGTGAGTTTGAGTGGTCAAAGCGGGCAATTCATGTGAGTGTCCGCAAACAGACCAAATGgtaagaatccattgcgctcgatcgtaaat--attggatgacaaattttccttgcaacttttaccattattattgtttgcctaactaaaatcaaaagtgttctgcttattcatctatgttatgatattaagcatttaattattttccctcctag
| ||  |||||||||||||||||||   |||||||||||||| ||| ||||||||||||||| |||| ||||||||||| || || | ||| || |||||||||| | |   |||    |||  |   |  |  | |     | |||| || | |  ||| |  |    ||| || ||  | | |    |   || |    |  ||     | | |  ||                                 
CCATCCTTCTATTTCATTATGATGGTCGAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTCGGAGACAAACAAAATGgtaaggagcttctgcaaaggattatttttgaacagaagtttcactttttctggtaggtttcaataa-gctatggtctgttttattc---ttttaacttcattctttgcaattttgtcctag--------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208189805|gb|GD987765.1|GD987765
EST:     GAGTGGTCAAAGCGGGCAATTCATGTGAGTGTCCGCAAACAGACCAAATG                         GTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
genomic: GAGTGGTCAAAGCGGGCAATTCATGTGAGTGTCCGCAAACAGACCAAATGgtaagaatcc ... tccctcctagGTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
EST: gi|208299059|gb|GE100490.1|GE100490
EST:     GGTCAAAGTCGGGTCTAATTTCATGTGAGTGTCCGCAAACAGACCAAATG                         GTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
genomic: GGTCAAAG-CGGG-C-AA-TTCATGTGAGTGTCCGCAAACAGACCAAATGgtaagaatcc ... tccctcctagGTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
EST: gi|208281624|gb|GE073772.1|GE073772
EST:     GGCAATTCATGTGAGTGTCCGCAAACAGACCAAATG                         GTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
genomic: GGCAATTCATGTGAGTGTCCGCAAACAGACCAAATGgtaagaatcc ... tccctcctagGTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
EST: gi|208133221|gb|GD932162.1|GD932162
EST:     GCGGGCAATTCATGTGAGTGTCCGCAAACAGACCAAATG                         GTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
genomic: GCGGGCAATTCATGTGAGTGTCCGCAAACAGACCAAATGgtaagaatcc ... tccctcctagGTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
EST: gi|193438151|gb|FK402170.1|FK402170
EST:     TGAGTGTCCGCAAACAGACCAAATG                         GTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
genomic: TGAGTGTCCGCAAACAGACCAAATGgtaagaatcc ... tccctcctagGTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
EST: gi|193304306|gb|FK270335.1|FK270335
EST:     GCGGGCAATTCATGTGAGTGTTCGCAAACAGACCAAATG                         GTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
genomic: GCGGGCAATTCATGTGAGTGTCCGCAAACAGACCAAATGgtaagaatcc ... tccctcctagGTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
EST: gi|208187995|gb|GD986809.1|GD986809
EST:     GCGGGCAATTCATGTGAGTGTCCGCAAACAGACCAAATG                         GTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
genomic: GCGGGCAATTCATGTGAGTGTCCGCAAACAGACCAAATGgtaagaatcc ... tccctcctagGTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCATATGACTA
EST: gi|7639690|gb|AW734007.1|AW734007
EST:     GAGTGGTCAAAGCGGGCAATTCATGTGAGTGTCCGCAAACAGACCAAATG                         GTGGTATGCCAAGCG
genomic: GAGTGGTCAAAGCGGGCAATTCATGTGAGTGTCCGCAAACAGACCAAATGgtaagaatcc ... tccctcctagGTGGTATGCCAAGCG