1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGCAAAAGAAGAAGCTTTAAGCCGAAAAGATATATTGGACAAGGTTGAGAAATGGATGTCAGCATGTGAAGAAGAAAGTTGGCTTGAAGATTATAATCGGgtacttaaaatctcgcttctgctttattttttttctgagtttgaatgattggttgtgcacagtcgtggatagagaggtgaagtagtattatgatcagaac...
species | Glycine max |
transcript | GLYMA02G46450.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AATGGATGTCAGCATGTGAAGAAGAAAGTTGGCTTGAAGATTATAATCGG GATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGTEST: gi|208259220|gb|GE055470.1|GE055470
genomic: AATGGATGTCAGCATGTGAAGAAGAAAGTTGGCTTGAAGATTATAATCGGgtacttaaaa ... tgtaaaacagGATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGT
EST: AAAGTTGGCTTGAAGATTATAATCGG GATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGTEST: gi|207682351|gb|GD665338.1|GD665338
genomic: AAAGTTGGCTTGAAGATTATAATCGGgtacttaaaa ... tgtaaaacagGATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGT
EST: AATGGATGTCAGCATGTGAAGAAGAAAGTTGGCTTGAAGATTATAATCGG GATGATAACAGGTAEST: gi|207735001|gb|GD712532.1|GD712532
genomic: AATGGATGTCAGCATGTGAAGAAGAAAGTTGGCTTGAAGATTATAATCGGgtacttaaaa ... tgtaaaacagGATGATAACAGGTA
EST: TGTCAGCATGTGAAGAAGAAAGTTGGCTTGAAGATTATAATCGG GATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGTEST: gi|51334691|gb|CO978557.1|CO978557
genomic: TGTCAGCATGTGAAGAAGAAAGTTGGCTTGAAGATTATAATCGGgtacttaaaa ... tgtaaaacagGATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGT
EST: AATGGATGTCAGCATGTGAAGAAGAAAGTTGGCTTGAAGATTATAATCGG GATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGTEST: gi|26048331|gb|CA784835.1|CA784835
genomic: AATGGATGTCAGCATGTGAAGAAGAAAGTTGGCTTGAAGATTATAATCGGgtacttaaaa ... tgtaaaacagGATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGT
EST: GAAGATTATAATCGG GATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGTEST: gi|193511966|gb|FK471418.1|FK471418
genomic: GAAGATTATAATCGGgtacttaaaa ... tgtaaaacagGATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGT
EST: GCATGTGAAGAAGAAAGTTGGCTTGAAGATTATAATCGG GATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGTEST: gi|10843940|gb|BF067293.1|BF067293
genomic: GCATGTGAAGAAGAAAGTTGGCTTGAAGATTATAATCGGgtacttaaaa ... tgtaaaacagGATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGT
EST: AATGGATGTCAGCATGTGAAGAAGAAAGTTGGCTTGAAGATTATAATCGG GATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGTEST: gi|193539636|gb|FK498606.1|FK498606
genomic: AATGGATGTCAGCATGTGAAGAAGAAAGTTGGCTTGAAGATTATAATCGGgtacttaaaa ... tgtaaaacagGATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGT
EST: AATGGATGTCAGCATGTGAAGAAGAAAGTTGGCTTGAAGATTATAATCGG GATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGT
genomic: AATGGATGTCAGCATGTGAAGAAGAAAGTTGGCTTGAAGATTATAATCGGgtacttaaaa ... tgtaaaacagGATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAAAAGAAGAAGCTTTAAGCCGAAAAGATATATTGGACAAGGTTGAGAAATGGATGTCAGCATGTGAAGAAGAAAGTTGGCTTGAAGATTATAATCGGgtacttaaaatctcgcttctgctttattttttttctgagtttgaatgattggttgtgcacagtcgtggatagagaggtgaagtagtattatgatcagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA