1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGAAGGGCTTTCCCACAAGGTGCTACAGTGGTATTTATGCAGAATGGAGGGCTGGTTTGCTACAGATGCTGATACCATATCACTGAAATGTTGGGATCAGgtaatttgacaaaaccaagtttgagatgatgaagtgaatggccaactttttctttttttcttttttcttatgtatacttataattgaatacaatgttgat...
species | Glycine max |
transcript | GLYMA02G45140.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCTGGTTTGCTACAGATGCTGATACCATATCACTGAAATGTTGGGATCAG GAAGTATTACTACCTGGTGGTCATGGTCTTATGGTCAGGGGTTACCAGCCTEST: gi|19346933|gb|BM891821.1|BM891821
genomic: GCTGGTTTGCTACAGATGCTGATACCATATCACTGAAATGTTGGGATCAGgtaatttgac ... ctgcatacagGAAGTATTACTACCTGGTGGTCATGGTCTTATGGTCAGGGGTTACCAGCCT
EST: GCTGGTTTGCTACAGATGCTGATACCATATCACTGAAATGTTGGGATCAG GAAGTATTACTACCTGGTGGTCATGGTCTTATGGTCAGGGGTTACCAGCCTEST: gi|4405605|gb|AI507754.1|AI507754
genomic: GCTGGTTTGCTACAGATGCTGATACCATATCACTGAAATGTTGGGATCAGgtaatttgac ... ctgcatacagGAAGTATTACTACCTGGTGGTCATGGTCTTATGGTCAGGGGTTACCAGCCT
EST: TGAAATGTTGGGATCAG GAAGTATTACTACCTGGTGGTCATGGTCTTATGGTCAGGGGTTACCAGCCT
genomic: TGAAATGTTGGGATCAGgtaatttgac ... ctgcatacagGAAGTATTACTACCTGGTGGTCATGGTCTTATGGTCAGGGGTTACCAGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGGGCTTTCCCACAAGGTGCTACAGTGGTATTTATGCAGAATGGAGGGCTGGTTTGCTACAGATGCTGATACCATATCACTGAAATGTTGGGATCAGgtaatttgacaaaaccaagtttgagatgatgaagtgaatggccaactttttctttttttcttttttcttatgtatacttataattgaatacaatgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT