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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGGTAGAGCACGGAGAGATGCTGCAGCACGAGCTATGCAGGGGTGGCACTCACAACGCCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAGgtctggagagttttgaattattgatttttgttctcctgaattatctttcattgcctgttactctgttttggccgccatataattgtttaatacttttgtttttcttag

Basic information

species Glycine max
transcript GLYMA01G36040.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36040.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0044g01840.t01 (Vitis vinifera), 5'ss of exon 7
ATCAGGTAGAGCACGGAGAGATGCTGCAGCACGAGCTATGCAGGGGTGGCACTCACAACGCCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAGgtctggagagttttgaattattg-atttttgttctcctgaattatctttcattgcctgttactctgttttggccgccatataattgtttaatacttttgtttttcttag
|||||| |||||||| || ||||||||||| || || |||||||| ||||||||||| || || || || || ||||||||| ||||||| ||||| ||||||| |  |  || ||||    | | |  | ||   ||| ||| | ||   ||   | ||  |   || |      ||| ||||  | ||| |  | ||| |||  |||
ATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAGGGTTGGCACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCGATTATCAAGgtctaggaatattagaataggcgcactcattttgctctgtattgtgttgtcttatatctttttagattgtaa----catttaataatataaca--tctgtcttttgtag

upper sequence: GLYMA01G36040.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S66_226V6.1 (Physcomitrella patens), 5'ss of exon 6
---ATCAGGTAGAGCACGGAGAGATGCTGCAGCACGAGCTATGCAGGGGTGGCACTCACAACGCCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAGgtctggagagttttgaattattgatttttgttctcctgaattatctttcattgcctgttactctgttttggccgccatataattgtttaatacttttgtttttcttag
   ||| ||  | ||||| |||||||| |||||||| || |||||||||||||| || || |||    | |||||||| ||    |  || ||||     || ||    ||  || ||  ||        |  ||  |||   ||    ||   |  ||   | |  ||        | ||   ||| | ||| | | |   ||  |    
AGGATCTGGACGTGCACGTAGAGATGCGGCAGCACGGGCAATGCAGGGGTGGCATTCGCAGCGC---ATGGGCAATGGGGATTCGAAAGAGCCTACCTCAAAAgt---aagctttatgtctttgcaggcgtgatttccctttgttgggatttggtagctaaaattaggtca-aatttcaattgtattctgtaaaattatatcttcac----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208132242|gb|GD929839.1|GD929839
EST:     ACTCACAACGCCTCCTAGGCAATGGTGAAGTCAGTGACCCTATTATTAAG                         GATAGGAATTCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCA
genomic: ACTCACAACGCCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAGgtctggagag ... tttttcttagGATAGGAATTCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCA