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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAGATGTTTCTGAGCTGGAGTTGAAATTTTCCGAACAATCAAAAATATTGTTGAATCTTCAACAAAAAGTTGATGACTTGGCATCCAAGgtttactgaacttctcaacccacttcttctctttgatagttatatgatatgatatctgtagctggaaattaatcagaagcttgaatttttatttctcttg...

Basic information

species Glycine max
transcript GLYMA01G29280.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G29280.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv15s0024g01470.t01 (Vitis vinifera), 5'ss of exon 6
GCCAGATGTTTCTGAGCTGGAGTTGAAATTTTCCGAACAATCAAAAATATTGTTGAATCTTCAACAAAAAGTTGATGACTTGGCATCCAAGgtttactg-aacttctcaacccac--tt--cttctctttgatagttatatgatatgatatctgtagctggaaattaatcagaagcttgaatttttatttctcttg
||||||| ||||||||||||||   ||  |||| |||||||||||  || | || ||||||||||| || |||||||| |||||||| |||||||| |   |||||| | ||||   ||  |||  |||| | | || | || |    |   | |     |  |   |  |  |  ||| |  || ||        
GCCAGATATTTCTGAGCTGGAGACAAAGCTTTCAGAACAATCAAAGTTACTCTTAAATCTTCAACAGAAGGTTGATGATTTGGCATCAAAGgtttattctgacttcttagcccatagttgacttgcctttcacaattgtctgttggacttattattcactgttacatacaaatactttgcagcttgatcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337334|gb|CO981200.1|CO981200
EST:     CAAAAATATTGTTGAATCTTCAACAAAAAGTTGATGACTTGGCATCCAAG                         CATGCTTACAATCCAGATGAGGAGTATACTGAGGTGGAATCCCAATTGCGG
genomic: CAAAAATATTGTTGAATCTTCAACAAAAAGTTGATGACTTGGCATCCAAGgtttactgaa ... ctgtttgtagCATGCTTACAATCCAGATGAGGAGTATACTGAGGTGGAATCCCAATTGCGG
EST: gi|38191775|gb|CF920981.1|CF920981
EST:     CAAAAATATTGTTGAATCTTCAACAAAAAGTTGATGACTTGGCATCCAAG                         CATGCTTACAATCCAGATGAGGAGTATACTGAGGTGGAATCCCAATTGCGG
genomic: CAAAAATATTGTTGAATCTTCAACAAAAAGTTGATGACTTGGCATCCAAGgtttactgaa ... ctgtttgtagCATGCTTACAATCCAGATGAGGAGTATACTGAGGTGGAATCCCAATTGCGG