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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCACAGAAGGAGTACTTTCCTCTTGTAGTTTGGAGTTACAACATATTGTTTCTTCTCTGTAATCGGATTTATGAAGGATATTCATTCTCTATGTTTGGgtaagaggcataagatttgttttactattatattttatgctaggagtaattctatttccacttaagattatgtatttacattgcag

Basic information

species Glycine max
transcript GLYMA20G25100.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G57600.1 (Arabidopsis thaliana), 5'ss of exon 5
TTGCACAGAAGGAGTACTTTCCTCTTGTAGTTTGGAGTTACAACATATTGTTTCTTCTCTGTAATCGGATTTATGAAGGATATTCATTCTCTATGTTTGGgtaagaggcataagatttg--ttttactattatattttatgctag-gagtaattctatttccacttaagattatgt--atttacattgcag------
|||||| ||     |||||||||    |  | |||| || ||||||||| |||||  |||| ||||| ||||||||||||||||| ||||| || || |||| ||     |||   |    ||| ||    ||| ||   | |   |  |  ||    |    ||||| | | ||   ||||   |    |      
TTGCACGGACTAGTTACTTTCCTTACATGCTGTGGACTTTCAACATATTTTTTCTCTTCTGCAATCGCATTTATGAAGGATATTCTTTCTCCATTTTCGGgtgagttatgtaaatctcacatttgacacacatacttggagttgttgtatggttgctgtgaagcttaacactttgataatttctctctttgtccaag

upper sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0559g00010.t01 (Vitis vinifera), 5'ss of exon 8
TTGCACAGAAGGAGTACTTTCCTCTTGTAGTTTGGAGTTACAACATATTGTTTCTTCTCTGTAATCGGATTTATGAAGGATATTCATTCTCTATGTTTGGgtaagaggcataagatttgttttactattatattttatgctaggagtaattctat-ttccacttaagattatgtatttac-attgcag-----------------
||||||  |   |||||||  |    | | |||||| || |||| |||| |||||| | | |||||| ||| ||||||||||||||||||| |  ||||||| ||     |||| |  | | ||  | | ||||   ||||  ||||| |   || ||| ||  | |  ||   | |||  |||| |                  
TTGCACGAACAAAGTACTTCTCATCAGCACTTTGGACTTTCAACTTATTTTTTCTTATATATAATCGTATTCATGAAGGATATTCATTCTCCACTTTTGGgtgagctctctaagctaggatata--aat-tattggttgctttgagtagtcagatgttcaacccatgcctactcacttatgattgtaaatgcttattttgcatag

upper sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0507g00010.t01 (Vitis vinifera), 5'ss of exon 5
TTGCACAGAAGGAGTACTTTCCTCTTGTAGTTTGGAGTTACAACATATTGTTTCTTCTCTGTAATCGGATTTATGAAGGATATTCATTCTCTATGTTTGGgtaagaggcataagatttgttttactattatattttatgctaggagtaattctatttcca--cttaagattatgtatttac-attgcag-----------------
||||||  |   |||||||  |    ||| |||||| || |||| |||| |||||| | | |||||| ||| ||||||||||||||||||| |  ||||||| ||     |||| |  | | ||   |  |  ||   |||  ||||| |   || | ||  |  | |  ||  || |||  |||| |                  
TTGCACGAACAAAGTACTTCTCATCAGTACTTTGGACTTTCAACTTATTTTTTCTTATGTATAATCGTATTCATGAAGGATATTCATTCTCCACTTTTGGgtgagctctctaagctaggatataaattcttggtt---gctttgagtagtcagatgttcaaccccatgcctacttacttatgattgtaattgcttattttgcatag