Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATTACCGGAGTCCTGACATGGGAGATGCTATCGAATTCTGTTTACATATATCTACCCCAGTTGAAAAGATTTCACTCATTAAACACAGAATACAAAGgtatgtgctgagtagtgtctgtcccaattgccgtgttgtaattttttgttctatatctctctgattgactgatactaataatgacatgacctcaatgcag

Basic information

species Glycine max
transcript GLYMA20G23910.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G23910.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G78610.1 (Arabidopsis thaliana), 5'ss of exon 4
ACTATTACCGGAGTCCTGACATGGGAGATGCTATCGAATTCTGTTTACATATATCTACCCCAGTTGAAAAGATTTCACTCATTAAACACAGAATACAAAGgtatgtgctgagtagtgtctgtcccaattgc-cgtgttgtaattttttgttctatatctctctgattgactgatactaataatgacatgacctcaatgcag
| |||||||| |||||||| |||||||||| |||||||||||   | || ||  |||| |||| ||| || ||   |||||| ||||| |||||   ||||||  |  ||   | |     || || || | |   || ||||   |     |   | | | | |||  |||       |  ||  ||             
ATTATTACCGTAGTCCTGATATGGGAGATGGTATCGAATTCTCCATCCACATTACTACTCCAGCTGAGAAAATCATACTCATCAAACAGAGAATCACAAGgtacat--tgcaaatttggaatcacagtttcacaaattttaatacctgaaaattcttgtatttcattacctgcattcgttgttgtgatag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15203791|gb|BI426559.1|BI426559
EST:     ATATCTACCCCAGTTGAAAAGATTTCACTCATTAAACACAGAATACAAAG                         TTACATTGATAACAAGAAGGAGCACTGGTATCCTTCACCTTTAATCGTATA
genomic: ATATCTACCCCAGTTGAAAAGATTTCACTCATTAAACACAGAATACAAAGgtatgtgctg ... ctcaatgcagTTACATTGATAACAAGAAGGAGCACTGGTATCCTTCACCTTTAATCGTATA
EST: gi|51342542|gb|CO983522.1|CO983522
EST:     ATATCTACCCCAGTTGAAAAGATTTCACTCATTAAACACAGAATACAAAG                         TTACATTGATAACAAGAAGGAGCACTGGTATCCTTCACCTTTAATCGTATA
genomic: ATATCTACCCCAGTTGAAAAGATTTCACTCATTAAACACAGAATACAAAGgtatgtgctg ... ctcaatgcagTTACATTGATAACAAGAAGGAGCACTGGTATCCTTCACCTTTAATCGTATA