Sequence
atgc intronic sequence ATGC exonic sequenceATTGTTTTTCTACCACTACTTGTTGCATCACTTGTTGGCATTTCTCGAGTTGATGACTACTGGCACCACTGGCAAGACGTGTTTGCGGGAGGTCTTTTAGgttggtctatccttagtatctcaattatttataaattaaataagcctcaaaaattacttaccactgttgttggcacttgactcactacataatatttcttcttccag
Basic information
species | Glycine max |
transcript | GLYMA18G53100.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G53100.2 (Glycine max), 5'ss of exon 6
lower sequence: AT3G02600.5 (Arabidopsis thaliana), 5'ss of exon 6
ATTGTTTTTCTACCACTACTTGTTGCATCACTTGTTGGCATTTCTCGAGTTGATGACTACTGGCACCACTGGCAAGACGTGTTTGCGGGAGGTCTTTTAGgttggtctatccttagtatctcaattatttataaattaaataagcctcaaaaattacttaccactgttgttggcacttgactcactacataatatttcttcttccag
|| || | || || | || ||||| | ||||| |||||||| || ||||||||||| ||||| || ||||||||||| ||||| ||||| | |||||| || | || || | | | || || | | | ||| || | | | ||| | ||| || ||
ATAGTCATACTCCCTTTGCTATTTGCAGCTCTTGTCGGCATTTCCCGTGTTGATGACTATTGGCATCATTGGCAAGACGTCTTTGCAGGAGGCTTGCTAGgtttgttttcactctctagtcacaaaggtcaaaacttt--ttccctttaaacatcattcaaaacttataccattgtctgaa--accgcag-----------------
upper sequence: GLYMA18G53100.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0006g02480.t01 (Vitis vinifera), 5'ss of exon 5
ATTGTTTTTCTACCACTACTTGTTGCATCACTTGTTGGCATTTCTCGAGTTGATGACTACTGGCACCACTGGCAAGACGTGTTTGCGGGAGGTCTTTTAGgttggt-ctatccttagtatctcaattatttataaattaaa---taagcctcaaaaattacttaccactgttgttggcacttgactcactacataatatttcttcttccag
||||| ||||| || |||||||||||| | |||||||||||||||||||| |||||||| ||||||||||||| || || ||||| |||||||| |||||| || |||| || | |||||| | |||| | || || ||| ||||| | | | || | | | | | | ||
ATTGTGTTTCTTCCCCTACTTGTTGCAACTCTTGTTGGCATTTCTCGAGTGGATGACTATAGGCACCACTGGCAGGATGTTTTTGCTGGAGGTCTGCTAGgtttgtgctattatttct-caccaattaatcataattagaaggatatattccaataattatctttaccaatcatttgaagtgaattttgtgcag-----------------
upper sequence: GLYMA18G53100.2 (Glycine max), 5'ss of exon 6
lower sequence: EFJ17723 (Selaginella moellendorffii), 5'ss of exon 5
ATTGTTTTTCTACCACTACTTGTTGCATCACTTGTTGGCATTTCTCGAGTTGATGACTACTGGCACCACTGGCAAGACGTGTTTGCGGGAGGTCTTTTAGgt----tggtctatccttagtatctcaattatttataaattaaataagcctcaaaaattacttaccactgttgttggcacttgactcactacataatatttcttcttccag
||||| | | || | || | |||| | | ||||| || || || ||||||||||| |||||||| ||||||||||||||||| || | | | ||||| || | | ||| || | | || ||| | | | | | |||| | |||| |
ATTGTCGTCGTCCCGTTGCTCGGTGCAACGTTGGTTGGGATATCACGCGTTGATGACTATTGGCACCATTGGCAAGACGTGTTTGCCGGGGCTATCATAGgtacactgtgttctacttggttttttttttctttctttttgtgcttaattcta----ttacattccacag-----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51338216|gb|CO982082.1|CO982082EST: TGATGACTACTGGCACCACTGGCAAGACGTGTTTGCGGGAGGTCTTTTAG GGCTTACAGTGGCTACATTTTGCTATTTGCAGTTTTTTCCTCCTCCTTATC
genomic: TGATGACTACTGGCACCACTGGCAAGACGTGTTTGCGGGAGGTCTTTTAGgttggtctat ... cttcttccagGGCTTACAGTGGCTACATTTTGCTATTTGCAGTTTTTTCCTCCTCCTTATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGTTTTTCTACCACTACTTGTTGCATCACTTGTTGGCATTTCTCGAGTTGATGACTACTGGCACCACTGGCAAGACGTGTTTGCGGGAGGTCTTTTAGgttggtctatccttagtatctcaattatttataaattaaataagcctcaaaaattacttaccactgttgttggcacttgactcactacataatatttcttcttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA