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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGGATAATCCCAGAGAGTGTGATCTACAGTTATGGAACTGTTCTTCTGGATCTTTTAAGTGGCAAGCACATTCCTCCAAGCCATgtatgttgcgttctaagaaaattcagtctctgcattcatataagaacatgctttatgttttattctgtttcataagacatgataagcattctatgttacc...

Basic information

species Glycine max
transcript GLYMA17G16420.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os10g42110.1 (Oryza sativa), 5'ss of exon 6
GCAGGATAATCCCAGAGAGTGTGATCTACAGTTATGGAACTGTTCTTCTGGATCTTTTAAGTGGCAAGCACATTCCTCCAAGCCATgtatgttgcgttctaagaaaattcagtctctgcattcatataagaacatgctttatgttttattctgtttcataagacatgataagcattctatgt-tacc-
||||  | ||| | ||||||||||| || || |||||||| |||||| |||||||||| ||||| |||||||| ||||| ||||||||||| | ||||   | |   ||   | |||  |   |||||   |   ||  |     ||||  |   ||  |   | ||   | || |  || | ||   
GCAGAGTCATCGCCGAGAGTGTGATATATAGCTATGGAACAGTTCTTTTGGATCTTTTGAGTGGGAAGCACATACCTCCTAGCCATgtatgcttcgttt--aaatccttacttttctcaagaaatatatatatcagcgcttctccttatcattactctcatatcctggataacactgcatctgtattt

upper sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G054634_T02 (Zea mays), 5'ss of exon 6
GCAGGATAATCCCAGAGAGTGTGATCTACAGTTATGGAACTGTTCTTCTGGATCTTTTAAGTGGCAAGCACATTCCTCCAAGCCATgtatg-----ttgcgttct---aagaaaattcagtctctgcattcatataagaacatgctttatgttttattctgtttcataagacatgataagcattctatgttacc
||||  |||| || |||||||||||||| || ||||||||||| ||  |||||||||| || || || ||||||||||| || ||||||||     |||| || |   ||||| | |  || |||| | | || |   | ||   |   ||  | |  |||  |  |   |||    | |  |   ||| |   
GCAGAGTAATTCCGGAGAGTGTGATCTATAGCTATGGAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCATgtatgcttccttgctttttttcaagaagaatatgtttctggaat-atctcttagcaatttccttgcatcacactgccttttggtaca----atgtttgtgatgat---

upper sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G169080_T01 (Zea mays), 5'ss of exon 6
GCAGGATAATCCCAGAGAGTGTGATCTACAGTTATGGAACTGTTCTTCTGGATCTTTTAAGTGGCAAGCACATTCCTCCAAGCCATgtatgttgcgttc---------taagaaaattcagtctctgcattcatataagaacatgctttatgttttattctgtttcataagacatgataagcattctatgttacc
||||  |||| || ||||||||||| || || ||||||||||| ||  |||||||||| || || || ||||||||||| || |||||||| | | ||           ||||| | |   | |||| | ||   ||  ||  | |  |   ||||  |    |   |   |  ||||   | | || |||    
GCAGAGTAATTCCCGAGAGTGTGATATATAGCTATGGAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCATgtatgcttcatttgctttttctcaagaagaatatatttctggaatctcttagcaa--ttccctgcattttggtacaatgtttgcaa--tgatggac-tgctgtgt----

upper sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G46570.1 (Arabidopsis thaliana), 5'ss of exon 5
GCAGGATAATCCCAGAGAGTGTGATCTACAGTTATGGAACTGTTCTTCTGGATCTTTTAAGTGGCAAGCACATTCCTCCAAGCCATgtatgtt------gcgttctaagaaaattcagtctctgcattcatataagaacatgctttatgttttattc-----tgtttcataagacatgataa--gcattctatgttacc
| ||  | || || || |||||||| | ||||||||||||| ||||| | ||||||||||| ||||| |||||||| || ||||||||||||         |||||||     |||| | | |       | |    |  |||      |||||||        | | ||  ||  || |       ||  || | |  
GTAGAGTCATTCCTGAAAGTGTGATATTCAGTTATGGAACTATTCTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCATgtatgtgcttccaatgttctaatttccttcattttatcttacttttttgtcaattgccgaggattttatttgtggtcttcttatctgaattggtggtgatgtttcatatcag-

upper sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0012g01140.t01 (Vitis vinifera), 5'ss of exon 6
GCAGGATAATCCCAGAGAGTGTGATCTACAGTTATGGAACTGTTCTTCTGGATCTTTTAAGTGGCAAGCACATTCCTCCAAGCCATgtatgttgcgttctaagaaaattcagtctctgcatt------catataagaacatgctttatgttttattctgtttcataagacatgataagcattctatgttacc
| ||| | || |||||||||||||| |||||||||||||| |||||  |||| || || ||||| ||||| || |||||||| |||||||||||| ||| | |  | |  | |   |  |||      |||      | |  ||    | ||| | || |    |   |  || ||    |||| |      
GGAGGGTCATTCCAGAGAGTGTGATATACAGTTATGGAACAGTTCTATTGGACCTGTTGAGTGGGAAGCATATCCCTCCAAGTCATgtatgttgctttccatgcca-tatacttgttagattgttctccatggtttgaaactctcagggatttttactctgcagtttaatgtgctagtttttcttta-----

upper sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ20301 (Selaginella moellendorffii), 5'ss of exon 5
GCAGGATAATCCCAGAGAGTGTGATCTACAGTTATGGAACTGTTCTTCTGGATCTTTTAAGTGGCAAGCACATTCCTCCAAGCCATgtatgttgcgttctaagaaaat-tcagtctctgcattcatataagaacatgctttatgttttattctgtttcataagacatgataagcattctatgttacc
| ||  |||  || |||||||| || || |||||||| ||||||||  |||||||| | || || |||||||||||||||||||| ||  ||    ||| |||    | | ||  | ||  ||  | |||     |||||  |  | | | | |                                 
GTAGAGTAACACCCGAGAGTGTTATTTATAGTTATGGTACTGTTCTCTTGGATCTTCTTAGCGGGAAGCACATTCCTCCAAGCCACgtgagtg--attcaaagctcctcttagcttgtgagtt--tgtaatcctgtgcttcttcatgtgtgcag---------------------------------

upper sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ23298 (Selaginella moellendorffii), 5'ss of exon 5
GCAGGATAATCCCAGAGAGTGTGATCTACAGTTATGGAACTGTTCTTCTGGATCTTTTAAGTGGCAAGCACATTCCTCCAAGCCATgtatgttgcgttctaagaaaat-tcagtctctgcattcatataagaacatgctttatgttttattctgtttcataagacatgataagcattctatgttacc
| ||  |||  || |||||||| || || |||||||| ||||||||  |||||||| | || || |||||||||||||||||||| ||| ||    ||| |||    | | ||  | ||  ||  | |||     |||||  |  | | | | |                                 
GTAGAGTAACACCCGAGAGTGTTATTTATAGTTATGGTACTGTTCTCTTGGATCTTCTTAGCGGGAAGCACATTCCTCCAAGCCACgtaagtg--attcaaagctcctcttagcttgtgagtt--tgtaatcctgtgcttcttcatgtgtgcag---------------------------------