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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGTAGAATGGCTCGTTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGgtttgtttcttgcatattcactttagcatatttcatggctgtacatagccctttgtcatgattttgtggtatcttaatgcag

Basic information

species Glycine max
transcript GLYMA17G13770.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G13770.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G144995_T01 (Zea mays), 5'ss of exon 6
TCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGTAGAATGGCTCGTTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGgtttgtttcttgcatat---tcactttagcatatttcatg---gctgtacatagccctttgtcatgattttg-tggtatcttaatgcag------------
|| || |||||||| || || ||  | || || ||||| |||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||  || |||| |||    | |  |   ||||   |   | ||  |||     | |||  |  ||     |||  ||||| | || |  || || |             
TCCTCCTTTATTGGCCGTGCTTCAACTAAGAACAAGGGCAGAATGGCTCGTTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttcgaggaagctctgtcaccggactgttttgtatgctaagtttactcattccaaaagcatctttttgattgttttgtactgtactcttgacttcag

upper sequence: GLYMA17G13770.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G110233_T01 (Zea mays), 5'ss of exon 6
TCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGTAGAATGGCTCGTTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGgtttgtttcttgcatattc--------actttagcatatttcatggctgtacatagcc-----ctttgtcatgattttgtggtatcttaatgcag--------
|| || |||||||| || || ||  |||| || ||||| |||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||  || |||| |||    | |  |          ||| |    |||   || | |      | ||     | |  || ||||| | |  || ||| ||            
TCCTCCTTTATTGGCCGTGCTTCAACCAAGAACAAGGGCAGAATGGCTCGTTACCTGGCAAACAAATGCTCGATTGCTTCACGCATTGACTGCTACTCGGgttagttctaggaagctctgttaccggactgttttgtatgctattgtttcctcgatccaaaagcatcatcttgattgttttatacctttatatttggtttcag

upper sequence: GLYMA17G13770.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G56110.1 (Arabidopsis thaliana), 5'ss of exon 6
TCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGTAGAATGGCTCGTTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGgtttgtttcttgcatattcactttagcatatttcatggctgtacatagccctttgtcatgattttgtggtat----cttaatgcag-------
||||| || ||||| || |||||||| || || |||||  | || |||||||||||||||||||| ||||| || ||||| |||||||| || ||| |||||     |||   | | ||  |  || | | ||   |  | |  ||   |  |||| |   | ||    |||    | | |||          
TCTTCCTTCATTGGCCGAGCATCTGCTAAGAACAAGGGCCGTATCGCTCGTTATCTTGCAAACAAGTGCTCTATAGCATCCCGGATTGATTGTTTTGCTGgtaaaaatctg--aaactccttgaagaagagttttggattatgaat--tctgttgtgaaagtgttaaattatgtgccctgatgtcctatgcag

upper sequence: GLYMA17G13770.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 6
TCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGTAGAATGGCTCGTTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGgtttgtttcttgcatattcactttagcatatttcatggct-gtacatagc---cctttgtc--atgattttgtggta------tcttaatgcag
||||||||||||||||| |||||||||   || |||||  | ||||||||||||||||||||||| || || ||||| || || |||||||| ||| |||||  ||||||   | ||||   |  |   |||||||  ||  |  || ||     ||| ||  || | ||||| | |      |||   |||||
TCTTCTTTTATTGGTCGTGCATCTGCCCGGAACAAGGGACGTATGGCTCGTTATCTTGCAAACAAGTGTTCCATTGCTTCTCGTATTGACTGTTTTGCTGgtaagtttct-ataaattcttatatggtcatttcatttctcatggatggcaactttttatctgataaatttgttgcacaatcttctgtgtgcag

upper sequence: GLYMA17G13770.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S88_119V6.1 (Physcomitrella patens), 5'ss of exon 6
TCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGTAGAATGGCTCGTTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGgtttgtttcttgcatattcactttagcatatttcatggctgtacatagccctttgtcatgattttgtggtatcttaatgcag----------------------------------------------
|| ||||| |||||  |||||  | |||| || |||||  | ||  | ||||||||||| || ||||| |||||||| ||||| ||||| ||||||||||||  |    ||  |        ||       |  |||  ||  |||   |||  || | ||||||    | |     |   |                                              
TCATCTTTCATTGGGAGGGCAAGTACCAAGAACAAGGGACGTATCTCGCGTTATCTTGCGAATAAATGTTCAATTGCTTCACGAATTGATTGCTTTTCTGgtaaggcatttttactcctgtgttgtagatgtaaatgtgtgcccatgagcctgagtgaggattttaca-tgttccgctcaggaattctgacgcgtctctgaggtataacgtaccatcaatcactgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208242900|gb|GE041534.1|GE041534
EST:     TTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTG                         AAAAGGGTACTACTGTTTTTGGGTCAGAAACTCCGTGAGCAAGTTGAGGAA
genomic: TTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGgtttgtttct ... cttaatgcagAAAAGGGTACTACTGTTTTTGGG-CAGAAACTCCGTGAGCAAGTTGAGGAA
EST: gi|193491563|gb|FK457417.1|FK457417
EST:     TTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTG                         AAAAGGGTACTACTGTTTTTGGGCAGAAACTCCGTGAGCAAGTTGAGGAAC
genomic: TTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGgtttgtttct ... cttaatgcagAAAAGGGTACTACTGTTTTTGGGCAGAAACTCCGTGAGCAAGTTGAGGAAC
EST: gi|208070598|gb|GD867579.1|GD867579
EST:     TTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTG                         AAAAGGGTACTACTGTTTTTGGGCAGAAACTACCGTGAGCAAGTT
genomic: TTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGgtttgtttct ... cttaatgcagAAAAGGGTACTACTGTTTTTGGGCAGAAACT-CCGTGAGCAAGTT
EST: gi|208310697|gb|GE104265.1|GE104265
EST:     TTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTG                         AAAAGGGTACTACTGTTTTTGGGCAGAAAACTACCGTGAGCAAGTT
genomic: TTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGgtttgtttct ... cttaatgcagAAAAGGGTACTACTGTTTTTGGGCAGAAA-CT-CCGTGAGCAAGTT
EST: gi|208091684|gb|GD885417.1|GD885417
EST:     TTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTG                         AAAAGGGTACTACTGTTTTTGGGCAGAAACTCCGTGAGCAAGTTGAGGAAC
genomic: TTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGgtttgtttct ... cttaatgcagAAAAGGGTACTACTGTTTTTGGGCAGAAACTCCGTGAGCAAGTTGAGGAAC
EST: gi|193461357|gb|FK428070.1|FK428070
EST:     TTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTCTTCTG                         AAAAGGGTACTACTGTTTTTGGGCAGAAACT
genomic: TTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGgtttgtttct ... cttaatgcagAAAAGGGTACTACTGTTTTTGGGCAGAAACT
EST: gi|207805279|gb|GD777285.1|GD777285
EST:     TTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTG                         AAAAGGGTACTACTGTTTTTGGGCAGAAACTCCGTGAGCAAGTTGAGGAAC
genomic: TTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGgtttgtttct ... cttaatgcagAAAAGGGTACTACTGTTTTTGGGCAGAAACTCCGTGAGCAAGTTGAGGAAC