1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAGACTGTGTCTGAAGTAACTGATGACAAGAAGGTCATTAAGAAGATCCTCAAGGAAGGGGAAGGATATGAGCATCCAAATGAGGGAGCCATTGTGAAATgtaaatgctagctaatacttattaatgtgaatgatggccttttcttttttatggatttaggacatggtttctgatgtcttcttcctttttttttcattcttgtag
species | Glycine max |
transcript | GLYMA16G10730.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAAGGAAGGGGAAGGATATGAGCATCCAAATGAGGGAGCCATTGTGAAAT TGAAAGTAATTGGTAAACTGCAAGATGGTACTTTATTTTTGAAAAAGGGTCEST: gi|7684632|gb|AW755280.1|AW755280
genomic: CAAGGAAGGGGAAGGATATGAGCATCCAAATGAGGGAGCCATTGTGAAATgtaaatgcta ... attcttgtagTGAAAGTAATTGGTAAACTGCAAGATGGTACTTTATTTTTGAAAAAGGGTC
EST: CAAGGAAGGGGAAGGATATGAGCATCCAAATGAGGGAGCCATTGTGAAAT TGAAAGTAATTGGTAAACTGCAAGATGGTACTTTATTTTTGAAAAAGGGTCEST: gi|7146792|gb|AW508714.1|AW508714
genomic: CAAGGAAGGGGAAGGATATGAGCATCCAAATGAGGGAGCCATTGTGAAATgtaaatgcta ... attcttgtagTGAAAGTAATTGGTAAACTGCAAGATGGTACTTTATTTTTGAAAAAGGGTC
EST: CAAGGAAGGGGAAGGATATGAGCATCCAAATGAGGGAGCCATTGTGAAAT TGAAAGTAATTGGTAAACTGCAAGATGGTACTTTATTTTTGAAAAAGGGTCEST: gi|14011452|gb|BG726374.1|BG726374
genomic: CAAGGAAGGGGAAGGATATGAGCATCCAAATGAGGGAGCCATTGTGAAATgtaaatgcta ... attcttgtagTGAAAGTAATTGGTAAACTGCAAGATGGTACTTTATTTTTGAAAAAGGGTC
EST: GCCATTGTGAAAT TGAAAGTAATTGGTAAACTGCAAGATGGTACTTTATTTTTGAAAAAGGGTC
genomic: GCCATTGTGAAATgtaaatgcta ... attcttgtagTGAAAGTAATTGGTAAACTGCAAGATGGTACTTTATTTTTGAAAAAGGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGACTGTGTCTGAAGTAACTGATGACAAGAAGGTCATTAAGAAGATCCTCAAGGAAGGGGAAGGATATGAGCATCCAAATGAGGGAGCCATTGTGAAATgtaaatgctagctaatacttattaatgtgaatgatggccttttcttttttatggatttaggacatggtttctgatgtcttcttcctttttttttcattcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA