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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACACTGTCTGGGATGAATCAGCTAATTTACCCTCAGACTTGGGCATTCACTCTAGTTGTACTTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAGgtacagtagtttttcttgttagttccctgaactttgttttatttgatgcactagtatgcacttgtttttgtaaacatccgacaagttttgtaatgtactt...

Basic information

species Glycine max
transcript GLYMA16G00560.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00560.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0035g00720.t01 (Vitis vinifera), 5'ss of exon 6
AACACTGTCTGGGATGAATCAGCTAATTTACCCTCAGACTTGGGCATTCACTCTAGTTGTACTTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAGgtacagtagtttttcttgttagttccctgaactttgttttatttgatgcactagtatgcacttgtttttgtaaacatccgacaagttttgtaatgtactt
|||| | || || |||||||||||||  || |||||||| ||||| |||||| |||||||| ||  ||||||  ||||||||||||| ||| |||| |||||| |||   | || |  ||| |    ||   ||| || |   |  | |       ||||||| ||||| |   | | |  ||  ||||  ||  |  | 
AACATTATCAGGAATGAATCAGCTAACATATCCTCAGACATGGGCCTTCACTATAGTTGTAATTACTTGTGTAATTACCCAAATGAACTATCTAAACAAGgtagagtgcctcttttctttattattttgccattttttcttccttttacttcttactgcacttctttttctgccctttcttcattttttacaacattgta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38193345|gb|CF922551.1|CF922551
EST:     CTCTAGTTGTACTTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAG                         GCACTGGATACTTTTAATACGGCAGTGGTATCTCCTATATATTATGTTATG
genomic: CTCTAGTTGTACTTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAGgtacagtagt ... ttgcaatcagGCACTGGATACTTTTAATACGGCAGTGGTATCTCCTATATATTATGTTATG
EST: gi|208128879|gb|GD927115.1|GD927115
EST:     CTCTAGTTGTACTTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAG                         GCACTGGATACTTTTAATACGGCAGTGGTATCTCCTATATATTATGTTATG
genomic: CTCTAGTTGTACTTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAGgtacagtagt ... ttgcaatcagGCACTGGATACTTTTAATACGGCAGTGGTATCTCCTATATATTATGTTATG
EST: gi|58020349|gb|CX707091.1|CX707091
EST:     CTCTAGTTGTACTTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAG                         GCACTGGATACTTTTAATACGGCAGTGGTATCTCCTATATATTATGTTATG
genomic: CTCTAGTTGTACTTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAGgtacagtagt ... ttgcaatcagGCACTGGATACTTTTAATACGGCAGTGGTATCTCCTATATATTATGTTATG
EST: gi|51343212|gb|CO983945.1|CO983945
EST:     CTCTAGTTGTACTTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAG                         GCACTGGATACTTTTAATACGGCAGTGGTATCTCCTATATATTATGTTATG
genomic: CTCTAGTTGTACTTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAGgtacagtagt ... ttgcaatcagGCACTGGATACTTTTAATACGGCAGTGGTATCTCCTATATATTATGTTATG
EST: gi|120531881|gb|EH260014.1|EH260014
EST:     CTCTAGTTGTACTTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAG                         GCACTGGATACTTTTAATACGGCAGTGGTATCTCCTATATATTATGTTATG
genomic: CTCTAGTTGTACTTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAGgtacagtagt ... ttgcaatcagGCACTGGATACTTTTAATACGGCAGTGGTATCTCCTATATATTATGTTATG
EST: gi|58016807|gb|CX703549.1|CX703549
EST:     CTCTAGTTGTACTTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAG                         GCACTGGATACTTTTAATACGGCAGTGGTATCTCCTATATATTATGTTATG
genomic: CTCTAGTTGTACTTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAGgtacagtagt ... ttgcaatcagGCACTGGATACTTTTAATACGGCAGTGGTATCTCCTATATATTATGTTATG
EST: gi|6848018|gb|AW350308.1|AW350308
EST:     CTTACCCAAATGAATTATTTAAATAAG                         GCACTGGATACTTTTAATACGGCAGTGGTATCTCCTATATATTATGTTATG
genomic: CTTACCCAAATGAATTATTTAAATAAGgtacagtagt ... ttgcaatcagGCACTGGATACTTTTAATACGGCAGTGGTATCTCCTATATATTATGTTATG