1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGATGCCAATGGCATTCTCTCCGTCGCTGCTATTGACAAAGGCACAGGGAAGAAGCAAGATATTACCATTACTGGTGCTAGCACCTTGCCTTCAGATGAGgtatccactatctctgacaatcaattactttaatagcctttttatgttgtttgtgtgtgtttttttttttaattgccagttgcttgcttcttttatgaagaaaaaaaaaaagtgccaatgtgaagggtcatttgagttaggagtctttttatgatgcttaggactaactctggaatgacatacag
species | Glycine max |
transcript | GLYMA16G00410.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGAAGCAAGATATTACCATTACTGGTGCTAGCACCTTGCCTTCAGATGAG GTGGAGAGAATGGTAAACGAAGCTGAGAAATTTTCAAAGGAAGACAAAGAAEST: gi|58021097|gb|CX707839.1|CX707839
genomic: AGAAGCAAGATATTACCATTACTGGTGCTAGCACCTTGCCTTCAGATGAGgtatccacta ... tgacatacagGTGGAGAGAATGGTAAACGAAGCTGAGAAATTTTCAAAGGAAGACAAAGAA
EST: AGAAGCAAGATATTACCATTACTGGTGCTAGCACCTTGCCTTCAGATGAG GTGGAGAGAATGGTAAACGAAGCTGAGAAATTTTCAAAGGAAGACAAAGAAEST: gi|209719997|gb|BW659422.1|BW659422
genomic: AGAAGCAAGATATTACCATTACTGGTGCTAGCACCTTGCCTTCAGATGAGgtatccacta ... tgacatacagGTGGAGAGAATGGTAAACGAAGCTGAGAAATTTTCAAAGGAAGACAAAGAA
EST: AGAAGCAAGATATTACCATTACTGGTGCTAGCACCTTGCCTTCAGATGAG GTGGAGAGAATGGTAAACGAAGCTGAGAAATTTTCAAAGGAAGACAAAGAA
genomic: AGAAGCAAGATATTACCATTACTGGTGCTAGCACCTTGCCTTCAGATGAGgtatccacta ... tgacatacagGTGGAGAGAATGGTAAACGAAGCTGAGAAATTTTCAAAGGAAGACAAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGCCAATGGCATTCTCTCCGTCGCTGCTATTGACAAAGGCACAGGGAAGAAGCAAGATATTACCATTACTGGTGCTAGCACCTTGCCTTCAGATGAGgtatccactatctctgacaatcaattactttaatagcctttttatgttgtttgtgtgtgtttttttttttaattgccagttgcttgcttcttttatgaagaaaaaaaaaaagtgccaatgtgaagggtcatttgagttaggagtctttttatgatgcttaggactaactctggaatgacatacag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG